Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 5e-15 seq6 95.1 2e-14 >seq2 Length=26406337 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 25078551 TCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGCAGCATGGGAACAATTCC 25078492 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || |||| | |||||| ||| || Sbjct 25078491 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTTGCTCTAATATTGTGAATTGA 25078432 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTAGAGCACAACGTTTC---AATGTGTCAT 69925 | ||| ||||| || || ||||| | ||| | | || || | | || |||| Sbjct 25078431 GACACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCCGAGAGAGTATCAT 25078376 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||||||||| ||||| | || || |||||| Sbjct 25078375 AAATTCCCTCGATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 25078329 >seq6 Length=21016138 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 2855158 TCCACCCTGATCAACATAACGGGCAGTATCATTGAACACACGTAGCATAGGAACAATCCC 2855217 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 || || | ||||||||||| ||||| || || | || |||||||| || || Sbjct 2855218 GTTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2855277 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || ||||| || ||| || |||||| |||| ||||||||| || Sbjct 2855278 TACACCAATCCCTCCAGCAGATTTGCTTATGGCAGCACATTCCTTCAGTGTGTCATAGAT 2855337 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| |||| | ||| ||||| || Sbjct 2855338 CCCCTCGATGCTGTCATCTTTCATACAGATAAGGAAACAACT 2855379 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 6618061 GCAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 6618120 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 ||| ||||| || ||||||||||| ||||| || ||||| ||| || || || || |||| Sbjct 6618121 TCCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGGC-GCAGAACGAGCCCGAGAAGA 6618179 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 | || || || || || ||||| || || | ||| Sbjct 6618180 AAATCCCCTCGACGCAGGCGAATGCCACGAGGCGCTC 6618216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680