Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 seq6 96.9 3e-15 seq2 95.1 1e-14 >seq5 Length=20807039 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || || || || |||||||| Sbjct 16643739 TGCCTCCCCGGAGACGGAGGACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 16643680 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | ||||| | ||||||||||| || ||||| | ||||||||||| || ||||| | Sbjct 16643679 CAAGAGTGCGCCCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTG 16643620 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| ||||||| || | | || | ||||| | || |||| Sbjct 16643619 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAA 16643560 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| | ||||| || ||||| ||||||||||| ||||| Sbjct 16643559 CCTCGAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 16643511 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| || || || || || || || ||||| || || | |||| | || || Sbjct 6507218 ACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTCC 6507277 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| ||||| || ||||| || | ||||| || || Sbjct 6507278 AGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 6507337 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||||| | ||||| ||||| || || | |||| Sbjct 6507338 ATCTTTGCCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTTTG 6507397 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || || |||||||||||||| Sbjct 6507398 CCGGTCAATGTCTTGACAAAGATTTGCAT 6507426 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||| || | | |||| |||| || || || || || Sbjct 6507914 GTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCC 6507973 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | |||||| || || |||||| ||| Sbjct 6507974 GCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCTTTG 6508033 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || |||||| || || ||||| | ||||| || || || Sbjct 6508034 ACATTGTCGATTGTATCAGAGGATTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGTGTC 6508093 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 6508094 TTCACAAAGATCTGCAT 6508110 >seq6 Length=21016138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | |||| |||| || ||||| || ||| Sbjct 18970201 GTAGACTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 18970142 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||||| || || ||||||| ||| Sbjct 18970141 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 18970082 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| ||||| || Sbjct 18970081 ACGTTGTCAATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCTGTCAGGGTC 18970022 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 18970021 TTGACGAAGATCTGCATA 18970004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 18969517 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGCTTGCCA 18969458 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||||| || Sbjct 18969457 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 18969398 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 18969397 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTC 18969338 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 18969337 TTCACAAAGATCTGCAT 18969321 >seq2 Length=26406337 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||||||| | ||||| || || || || |||||||| | Sbjct 20340687 CCTCCACGGAGACGCAGAACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 20340746 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| || || || | ||||| | ||| ||||| || || Sbjct 20340747 AACGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGGAGGG 20340806 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| || | | | || | || || | | |||||| Sbjct 20340807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTATCAGAGCTTTCAACC 20340866 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || || ||||||||||| ||||| Sbjct 20340867 TCAAGTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 20340913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||||| || | || || || || ||||||||||| || || Sbjct 20340231 CCTCCACGAAGGCGGAGGACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAATCAGCC 20340290 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| ||||| |||| || ||||| || || || | ||||| | ||| || || ||||| Sbjct 20340291 AATG-TGCGCCCGTCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGCGG 20340349 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||| || || | | || | ||||| | | || || Sbjct 20340350 GATGCCCTCCTTGTCCTGGATTTTTGCCTTAACATTGTCAATTGTGTCGGAGCTCTCCAC 20340409 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || |||||||| | ||||| || ||||| ||||||||||| |||||| || || Sbjct 20340410 CTCCAGAGTTATGGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCATACCTCCT 20340464 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | ||||| || || ||||| ||||| || || |||| |||| ||||||| Sbjct 20340477 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCCAATGT-GCGCCCGTCTTC 20340535 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| || || | || || | ||| ||||| || | | ||||| || || Sbjct 20340536 CAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATCAGGAGAGATCCCCTCCTTGTCCTG 20340595 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | || || | | || || || ||||| |||| || Sbjct 20340596 GATCTTGGCCTTGACATTGTCGATTGTATCAGAGCTCTCTACCTCAAGAGTGATAGTCTT 20340655 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||||||||| Sbjct 20340656 TCCTGTAAGGGTCTTCACAAAGATTTGCAT 20340685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| || ||||| || |||||| | ||||||||||| || ||||| || | ||||| | Sbjct 2676862 CGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCT 2676921 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| || | | || | |||||| | | || || || || || | Sbjct 2676922 TGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCAAGGGTGA 2676981 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||||| |||||||| ||||| ||||| ||||| Sbjct 2676982 TGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 2677018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934337853344