Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 2e-12 seq6 87.8 6e-12 >seq7 Length=22540073 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757 |||||| |||||| || ||||| || || ||||| || | || || ||| || Sbjct 17337575 GCTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 17337634 Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 | || ||||||||||| | || ||||||||||| |||| ||| || ||||| ||| Sbjct 17337635 TCTGCG-CCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAAC 17337693 Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 || || ||| || |||||||| | || ||||||||||| || || ||||| Sbjct 17337694 GAGCTCATCTCCCGCGACGAGGGGCTCCACTGCGACTTCGCGTGCCTCGTCTAC 17337747 >seq6 Length=21016138 Score = 87.8 bits (96), Expect = 6e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| ||||||||||||| || |||| || || || || ||||| || | Sbjct 6618158 CCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGAGCTCA 6618099 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTA 443870 || || ||||||||| | || |||||||||||||| || ||||| Sbjct 6618098 TCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTA 6618053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335755793340