Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq6 109 7e-19 >seq7 Length=22540073 Score = 118 bits (130), Expect = 1e-21 Identities = 306/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 17338022 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 17337963 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || | || | || | ||| |||| | | ||| | || Sbjct 17337962 CAGTCGAAGGGGTTAACAACATTGTACATCTTCTTGCAGCCCAGCGCCAT-GAGCAAGCG 17337904 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 ||| | ||| |||| ||||||| | |||| ||| |||||| || | ||| | || Sbjct 17337903 ATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGCGCGAC 17337844 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||||||||| ||| |||| | |||| || ||||| || || || || || Sbjct 17337843 G-GGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAATCTCGC 17337785 Query 122609 GGATAGTTTCGGTAGTGG----GTCTATTACGCAA-AGTCTTGAAGA-GCTCCACGGCAA 122662 ||| ||| | | | | | | || | ||| | | ||| | |||| | | Sbjct 17337784 GGACG----CGGGACTCGTCAAGCTTGCTTCGGAGGAGT-TCGTAGACGAGGCACG-CGA 17337731 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || |||||| ||||| || ||||| || || || || |||||| || || |||| Sbjct 17337730 AGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCA 17337671 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 |||| || |||||||| | ||| | || |||||||| || || ||||||||||| |||| Sbjct 17337670 TGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCT 17337611 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 | || || || ||||| | || || ||||||||| Sbjct 17337610 CGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 17337576 >seq6 Length=21016138 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || ||||| || || || || ||||| || || |||||||| || Sbjct 6618076 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGCATGAGGCC 6618135 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| |||| ||| | || |||||||| || || |||||||| || ||||| || || Sbjct 6618136 ACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCCCTCGACGCA 6618195 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 6618196 GGCGAATGCCACGAGGCGCTCGGCGAAG 6618223 Score = 109 bits (120), Expect = 7e-19 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| || Sbjct 18387615 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCT 18387674 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | ||| ||||| | ||||| ||||||||||| || ||||| ||||| | Sbjct 18387675 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATCTCAGTAAGTAACTGATTCAAA 18387734 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||| ||| | ||||||| | ||| | |||| | || Sbjct 18387735 GTCTGCTCCCTTTCATCGTTTCC------ACCACCAATACCTGTCCCTCTTTGCCTTCCA 18387788 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || ||||| || || ||| || ||| | | || Sbjct 18387789 ACAGCATCGATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA 18387848 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| || || ||||||||||||||||| Sbjct 18387849 AGATCACGAACTCGGGAGGCACCAACTCCCACAAACATCTCCACAAA 18387895 Score = 107 bits (118), Expect = 2e-18 Identities = 271/409 (66%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||| || | || || || || || ||| ||||||| | |||| | || || || Sbjct 20727942 CGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGCCTGTTCGTTGCA 20728001 Query 11510 GCAATAACCACAATG---CCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGA 11566 |||| ||||||| ||| | | | |||| ||||||||||| || | | || Sbjct 20728002 GCAAG---CACAATGACACCACTGTTCCCGGCAAAACCATCCATCTCCGTCAAGAGCTGG 20728058 Query 11567 TTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGC 11624 ||||| || || || ||||||||||| | | | | | || |||| || ||| | | Sbjct 20728059 TTAATGGTCTGCTCCCTCTCATCATTCCCC--CCTCCGAGCCCCGCACCACGCTGCCTCC 20728116 Query 11625 CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 11684 | || |||||||||||||| ||||| ||||| || || || | || | || | Sbjct 20728117 CGACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTGCCTTCTCGA 20728176 Query 11685 AGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAG 11744 | ||||| | ||||| ||||| ||||| || |||| ||| || || | | || | Sbjct 20728177 ACAGATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACTCCGACGCGG 20728236 Query 11745 AGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 ||| || ||| || || | || || |||| ||| || || || || ||||| | Sbjct 20728237 CGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCAGCGTCTTCC 20728296 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| || ||| || |||| ||| || ||||||||||||||| Sbjct 20728297 CCGTCCCCGGCGGGCCGACGAGGAGGCACCCCTTGGGGATCTTGGCACC 20728345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200