Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7 149 8e-31 seq6 147 3e-30 >seq7 Length=22540073 Score = 149 bits (164), Expect = 8e-31 Identities = 315/457 (69%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 17338022 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 17337963 Query 129788 AAATCAAATGGGTT-----CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 | || || ||||| | ||| | || || || ||| ||| | |||| | Sbjct 17337962 CAGTCGAAGGGGTTAACAACATTG---TACATCTT-CTTGCAGCCCAG-CGCCATGAGCA 17337908 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-G 129901 ||||| | ||| |||| ||||||| |||| ||| |||||| || | ||| | Sbjct 17337907 AGCGATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCCCGTTCATCCCAACGAGCG 17337848 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || ||||| ||||| ||| |||| || |||| ||||| || || || || || Sbjct 17337847 CGACG-GGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTCAACGGCATCAGCAACAATC 17337789 Query 129962 GCGTGAATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGC 130017 || | | | | ||| || | || | || | ||| | | ||| | |||| | Sbjct 17337788 TCGCGGACGCGGGACTC-GT-CAAGCTTGCTTCGGAGGAGT-TCGTAGACGAGGCACG-C 17337733 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || |||||| |||||||| ||||||||||| || || |||||| || || || Sbjct 17337732 GAAGTCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGGG 17337673 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || || || || ||||| |||||||||||||| Sbjct 17337672 CATGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 17337613 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || |||||||| | ||| ||||| || ||| Sbjct 17337612 CTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 17337576 >seq6 Length=21016138 Score = 147 bits (162), Expect = 3e-30 Identities = 311/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||| |||||||| ||||| || | || | ||| |||||| Sbjct 6617777 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 6617836 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || ||| || | | |||| | || Sbjct 6617837 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGCAAGCG 6617895 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | || Sbjct 6617896 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 6617955 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 6617956 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 6618014 Query 129966 GAATG---GTCTC--CGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAA 130020 | | | | ||| || || | || | | | | | || ||| || ||| || Sbjct 6618015 GGACGCGAGCCTCATCGAGCTTGCCCTG--GAGGAGATCATAGAGGAGG--CA-GGCGAA 6618069 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||||||||||||||| ||||||||||| || || ||||| || || ||||| Sbjct 6618070 GTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGTCCCGGCAT 6618129 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || ||||| |||| |||||| || || || || ||||| |||||||| |||||||| Sbjct 6618130 GAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATCCCCTC 6618189 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 6618190 GACGCAGGCGAATGCCACGAGGCGCTCGGCGAAG 6618223 Score = 140 bits (154), Expect = 4e-28 Identities = 285/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | ||||| ||||| || ||| | ||||| | ||| Sbjct 20727930 ACGGTGACCTGCCGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGC 20727989 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | |||||| || || | |||| || || | | |||| ||||||||||| ||| Sbjct 20727990 CTGTTCGTTGCAGCAAGCACAATGACACCACTGTTCCCGGCAAAACCATCCATCTCCGTC 20728049 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGC 14228 ||||| || || ||||| || || | ||||||||| | | | | | ||||||| | Sbjct 20728050 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCACCAC 20728107 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGG 14288 | ||| | ||||| || ||||| ||||||||||| || || || || || | | Sbjct 20728108 GCTGCCTCCCGACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTG 20728167 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | || || | ||| | ||| || ||||||||||| || |||| ||| || || | Sbjct 20728168 CCTTCTCGAACAGATCCCTCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACT 20728227 Query 14349 TGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | |||| ||| || ||| || ||| | || || |||| ||| || || || | Sbjct 20728228 CCGACGCGGCGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCA 20728287 Query 14409 GGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 | |||||||||||||| || || |||| | |||||| | | |||||| ||||||| Sbjct 20728288 GCGTCTTCCCCGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCACC 20728345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435107234720