Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq6 127 2e-24 >seq7 Length=22540073 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 17337576 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 17337635 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 17337636 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGACTCATGCCCGGGCTCACCTTCTCCAACGA 17337695 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 17337696 GCTCATCTCCCGCGACGAGGGGCTCCAC 17337723 >seq6 Length=21016138 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| | ||||| || || || ||||| || |||||||| || || || Sbjct 6618223 CTTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTT 6618164 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||| || ||||| || |||||||| || ||| ||||||||||| Sbjct 6618163 CTGCGCCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGA 6618104 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 6618103 GCTCATCTCCCGCGACGAGGGTCTCCAC 6618076 Score = 123 bits (136), Expect = 3e-23 Identities = 282/415 (68%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | ||||| || || |||||| ||||||| | ||| | ||||| || Sbjct 20727942 CGATCGAACCTCCCTGGCCGGAGAAGCGCGGCATCAAGCACATCCGGCCTGTTCGTTGCA 20728001 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 || | |||| | ||| |||| | |||||||||||||||| ||||| || |||| Sbjct 20728002 GCAAGCACAATGACACCACTGTTCCCGG--CAAAACCATCCATCTCCGTCAAGAGCTGGT 20728059 Query 9642 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9699 |||| || || |||| ||||||||| | | | | | || |||| || ||| | || Sbjct 20728060 TAATGGTCTGCTCCCTCTCATCATTCCC--CCCTCCGAGCCCCGCACCACGCTGCCTCCC 20728117 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 9755 || |||||||||||||| ||||| || ||||| || ||| || || | | Sbjct 20728118 GACAGCATCAATCTCATCGATGAACACAATGCAAGGCGCCTTGGCCTTTGCCTTC----T 20728173 Query 9756 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || ||||||| ||| || | || || ||||| || |||| ||| || || | | Sbjct 20728174 CGAACAGATCCC--TCACCCTGGATGCACCGACACCGACGAACAGCTCGACGAACTCCGA 20728231 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 |||| ||| || ||| || || | || || || | ||| || || || || || Sbjct 20728232 CGCGGCGCATGAGAAGAACGGCACGCCGGCCTCTCCGGCGACGGCACGCGCCAGCAGCGT 20728291 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 ||| ||||| || ||| || |||||| |||||| | | || |||||||| || Sbjct 20728292 CTTCCCCGTCCCCGGCGGGCCGACGAGGA-GGCACCCCTTGGGGATCTTGGCACC 20728345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 231/343 (67%), Gaps = 20/343 (6%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613 ||| ||||||||| | | || || || || || |||| ||| || |||||| | || Sbjct 18387644 ATCCAGGATATCAGCCCTGTTGGTGGCAGCTATAACAATAATTCCAGTGTTTCCCT--CA 18387701 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| || | | || || | ||| || |||| |||||| || | Sbjct 18387702 AAACCATCCATCTCAGTAAGTAACTGATTCAAAGTCTGCTCCCTTTCATCGTTTCC---- 18387757 Query 9674 ATACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||||||| | ||| | |||| |||| || ||||| || ||||||| || || Sbjct 18387758 --ACCACCAATACCTGTCCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAATACA 18387815 Query 9728 ATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 ||||| || ||| | | | | ||| ||| ||||| || || || ||| || || Sbjct 18387816 ATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACTCGGGAGGCACCAAC 18387874 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 9845 || ||||||||||||||||| | | | | | || | || || || ||| || || Sbjct 18387875 TCCCACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTT 18387933 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || ||||| || ||| || | |||||||| || || || Sbjct 18387934 CTCCTGCAATAGCCTTGGCAAGCAAGGTCTTACCAGTTCCAGG 18387976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880