Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 235 6e-57 seq7 187 3e-42 >seq6 Length=21016138 Score = 235 bits (260), Expect = 6e-57 Identities = 591/878 (67%), Gaps = 39/878 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 6618636 TTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGG 6618577 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG-CTCAATTACG- 59679 | | |||||| | |||||| |||| ||| | | ||||||| | | | | || Sbjct 6618576 ACGGCGGAGGAGGTCGACCTCTCCGGCGACGCGCGCCACTGGGACACGACGCTTTCACCC 6618517 Query 59680 -ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| || |||||| || || ||||||||||||||| || ||||| ||| Sbjct 6618516 AACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCGGCGTCCGACGGAATCGTG 6618457 Query 59739 ATGGAAAATATAGA---CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || | | | ||| || || ||| | |||||||| || | Sbjct 6618456 CTCGAGAACCTCGCGTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCGAGGGCA 6618400 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 6618399 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 6618341 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 6618340 CGAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 6618281 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 6618280 CCCCGCCGTCCGCCGCAAGGCCGATTGGGCCATGCGATGGATCGACGGCGGCGAGCGC-- 6618223 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || || |||||||| ||||||||| Sbjct 6618222 TTCGCCGAGCGCCTCGTGGCATTCGCCTGCGTCGAGGGGATTTTCTTCTCGGGCTCGTTC 6618163 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || |||||||| ||||||||||||||||||||||| || | ||||||||||||| Sbjct 6618162 TGCGCCATCTTCTGGCTGAAAAAGCGTGGCCTCATGCCGGGACTCACTTTCTCCAACGAG 6618103 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| |||||||| ||||| || || || || | |||||| | ||| Sbjct 6618102 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGC-CTGCCTCCTCTATGATCTCCT 6618044 Query 60152 ATTGGAAAAATGCCCTTCCA--AGGAT---ATTCACAAGATTGT-TCAGTGGGCTTGTGA 60205 || || || || | ||| | | | | |||| || | | | | | || Sbjct 6618043 CCAGGGCAA--GC---TCGATGAGGCTCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGA 6617990 Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | ||||| |||||| || || ||||| || | ||| | || ||| ||| | Sbjct 6617989 CATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGA 6617930 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATG--GCCCAGTTTGGA 60320 |||| |||||||| |||| ||||| |||||| |||||| || | | | | Sbjct 6617929 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCTTGCTCATGGCGCTCGGCTGCAA 6617870 Query 60321 GAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAA 60380 |||| || ||| ||| ||||| ||||||||||||||| |||||| || | Sbjct 6617869 GAAG-----ATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAG 6617815 Query 60381 GGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||||||||||||||||||| ||||| || || Sbjct 6617814 GGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 6617777 >seq7 Length=22540073 Score = 187 bits (206), Expect = 3e-42 Identities = 451/664 (68%), Gaps = 28/664 (4%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| || ||||||||| | ||| ||| || |||| || Sbjct 17337373 GACGTGCAGGTCGCCGAGGCGAGGGCGTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 17337431 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| || |||| | | || || | ||||||| Sbjct 17337432 CCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAGGA 17337491 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||||| | || ||| || || | || || || ||||| || Sbjct 17337492 CCGCCTCTTCCGCGCCATCGTCACCGTCCCGGCCGTCCGCCGCAAGGCCGACTGGGCGAT 17337551 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | |||| || || | || ||| | || || || ||||| Sbjct 17337552 GCGCTGGATCGACGGCGGCGAGCGC--TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTC 17337609 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| |||||||| ||| Sbjct 17337610 GAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGACTC 17337669 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||| || || | |||||||||||||| || ||||| |||||||| ||||| || Sbjct 17337670 ATGCCCGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGGCTCCACTGCGAC 17337729 Query 60126 TTTGCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAG---GATATTCA 60181 || || ||| | | |||| || || | ||| | | | | | || | | Sbjct 17337730 TTCGC-GTGCCTCGTCTACGAACTCC--TCCGAAGCAAG-CTTGACGAGTCCCGCGTCCG 17337785 Query 60182 CAAGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 | |||||||| | | | | | ||| | ||||| |||||| || || || || || Sbjct 17337786 CGAGATTGTTGCTGATGCCGT-TGACATCGAGAGGGAGTTCGTCTGCGACGCACTCCCCG 17337844 Query 60241 GCAAACTCATAGGTATGGACGCTGGAG-AAATGACGCAGTACATTCAGTTTGTCGCGGAC 60299 | ||| | || ||| ||| |||| |||| |||||||| |||||||||| || Sbjct 17337845 TCGCGCTCGTTGGGATGAACG-GGGAGCTGATGAGCCAGTACATCGAGTTTGTCGCTGAT 17337903 Query 60300 CGC---CTCATGGCCC--AGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCG 60354 ||| |||||||| | | | ||||| || ||| || |||||| |||| Sbjct 17337904 CGCTTGCTCATGGCGCTGGGCTGCAAGAAG-----ATGTACAATGTTGTTAACCCCTTCG 17337958 Query 60355 ACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGG 60414 ||||||||||| |||||| || | || |||||||||||||| |||||||| ||||| | Sbjct 17337959 ACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTG 17338018 Query 60415 ATTA 60418 | || Sbjct 17338019 ACTA 17338022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524717721280