Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 152 6e-32 seq6 116 4e-21 seq3 93.3 5e-14 seq1 93.3 5e-14 seq2 91.5 2e-13 seq12 89.7 6e-13 >seq7 Length=22540073 Score = 152 bits (168), Expect = 6e-32 Identities = 561/850 (66%), Gaps = 43/850 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | || |||||| ||||||| Sbjct 17338022 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 17337963 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| || ||| || ||||| | | | |||||||| | Sbjct 17337962 CAGTCGAAGGGGTTAACAACATTGTACAT---CTTCTTGCAGCCCAGCGCCATGAGCAAG 17337906 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTT-CTCCCGCATCCATGCCGATGAGTTT 74638 ||||| || ||||| | |||||||| |||| ||||| | | ||| || | ||| Sbjct 17337905 CGATCAGCGACAAACTCGATGTACTGGCTCATCAGCTCCC-CGTTCATCCCAACGAGCGC 17337847 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGG--ACAATC 74696 | || ||||| ||| || ||||| ||||| | || || ||| | |||||| Sbjct 17337846 GACGGGGAGTGCGTCGCAGACGAACTCCCTCTCGATGTC--AACGGCATCAGCAACAATC 17337789 Query 74697 TTGTGAATGTCTTTGGAAGGG-CACTTTTCCCTCAGGTGAGA--GTAAA-GCGTCACGGC 74752 | | | | | ||| | || || | || | ||| ||| | | | |||| | Sbjct 17337788 TCGCGGACGCG---GGACTCGTCAAGCTTGCTTCGGAGGAGTTCGTAGACGAGGCACG-C 17337733 Query 74753 AAACTCCTGATGCGAGCCT-TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 || || || ||||| || || | | || | || || || || | || || | Sbjct 17337732 GAAGTCGCAGTG-GAGCCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCGG 17337674 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| |||||||||||||| | ||| |||||||| |||||||| || ||||||||| | Sbjct 17337673 GCATGAGTCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCC 17337614 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCC 74928 | ||||| || || || ||||| || || | ||||| | || ||| | ||| |||| Sbjct 17337613 CCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCGTCGATCC 17337557 Query 74929 AAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGA 74988 | | ||||| || || || || ||| || ||||| || |||| || |||||| Sbjct 17337556 AGCGCATCGCCCAGTCGGCCTTGCGGCGGACGGCCGGGACGGTGACGATGGCGCGGAAGA 17337497 Query 74989 GGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 ||| ||||||| || || || | | || | || || |||||| |||||| Sbjct 17337496 GGCGGTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCCG 17337437 Query 75049 AATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 | || || |||| || ||| |||| | ||||||| | || |||||| || | ||| Sbjct 17337436 AGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAACGCCCTCGCCTCGGCGACCTGC 17337378 Query 75108 ACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 || || || || | | | ||| ||||| | |||||||||||| |||||||||| Sbjct 17337377 ACGTCGGACATG-AACCTGGACG-CGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGA 17337320 Query 75166 AAAAAGCCAGTACCATTTTGATA--AAGTGGCGCTCATC----GTCAGTGAGTTTGTCCC 75219 | || || || || | || | ||||| ||||| || | || ||| |||||| Sbjct 17337319 AGAAGGCGAGCAC--GTGGGACACGAAGTGACGCTCGTCCGGGGAGAGGGAG-GTGTCCC 17337263 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | | | ||| || | | || | |||||| |||||||||| | | | ||||| Sbjct 17337262 AGTGGCGCGCGTCGCCGGAGAGGTCGACCTCCTCCGCCGTCCAGAACGACGCCACCGCCT 17337203 Query 75280 TTTTGTACAA 75289 | ||||| || Sbjct 17337202 TCTTGTAGAA 17337193 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1725346 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1725287 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1725286 TGAGCTACGAAAGCAA 1725271 >seq6 Length=21016138 Score = 116 bits (128), Expect = 4e-21 Identities = 356/537 (66%), Gaps = 15/537 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || |||||||| |||| ||| |||||||| ||||| || || |||| Sbjct 6618119 AGTCCCGGCATGAGGCCACGCTTTTTCAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAG 6618178 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 || || || ||||| || || || || || ||||| | ||||| | || ||| | | Sbjct 6618179 AAAATCCCCTCGACGCAGGCGAATGCCACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 6618235 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || ||| || ||||| || ||||| || Sbjct 6618236 TCGATCCATCGCATGGCCCAATCGGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCG 6618295 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 6618296 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 6618355 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | || |||||| || Sbjct 6618356 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAATGCCCTCGCCTCGGC 6618414 Query 75101 AATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||| || || |||| | | | ||| ||||| | ||||| ||||| || Sbjct 6618415 GACCTGCACGTCGGACATGAACC-TGGACG-CGAGGTTCTCGAGCACGATTCCGTCGGAC 6618472 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCAT--CGTCAGTGAGT-TTG 75215 || ||||| || || || || ||| ||||||||||| | || | | || || Sbjct 6618473 GCCGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTTGGGTGAAAGCGTCGTG 6618532 Query 75216 TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATC 75275 ||||| | | ||| || | | || | |||||| |||||||||| | | | | Sbjct 6618533 TCCCAGTGGCGCGCGTCGCCGGAGAGGTCGACCTCCTCCGCCGTCCAGAACGACGCCACC 6618592 Query 75276 GCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAATGTCGTAAATCGG 75332 ||||| ||||| || ||| | | ||||| ||| || || ||| |||||| Sbjct 6618593 GCCTTCTTGTAGAACTCCCAGATCTGCGGGTACCGGATGGGGAACATCGAGAATCGG 6618649 >seq3 Length=29602667 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 || ||||||||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 21168259 AGGCTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 21168318 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||||||| Sbjct 21168319 CAACTGAGCTACGAAAGC 21168336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 6139249 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6139308 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 6139309 TGAGCTACGAAAGC 6139322 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 25994542 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25994601 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 25994602 TGAGCTACGAAAGC 25994615 >seq1 Length=32922458 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1387898 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1387839 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1387838 TGAGCTACGAAAGCAA 1387823 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTA--CCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||| |||| | || |||| | |||||||||||||||||||||||||| |||| Sbjct 23831156 TGCTTTCGTTGAGAGTCGAACTCAAGAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 23831097 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 23831096 ACTGAGCTACGAAAGC 23831081 >seq2 Length=26406337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 17986446 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 17986505 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 17986506 TGAGCTACGAAAGCA 17986520 >seq12 Length=17761961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 17420999 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 17421058 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 17421059 TGAGCTACGAAAGC 17421072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600