Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq5 123 2e-23 seq8 104 2e-17 seq6 89.7 4e-13 seq1 89.7 4e-13 seq9 84.2 2e-11 >seq2 Length=26406337 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| |||||| | || || ||||| ||||| | || Sbjct 2677019 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 2676960 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 2676959 CGACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 2676900 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| ||| | |||| | | || ||||| Sbjct 2676899 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTCGCTGACTACAA 2676840 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || ||||| | |||| ||||| Sbjct 2676839 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTGCGTCTCAGGGGAGGCAT 2676789 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||||||||||||| | || || || || ||||| | || Sbjct 2677247 CATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 2677188 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 2677187 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 2677128 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || |||| ||| | |||| || | || ||||| Sbjct 2677127 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCAGGACCCTTGCTGACTACAA 2677068 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | ||| | |||| ||||| Sbjct 2677067 CATCCAGAAGGAGTCGACCCTCCACCTTGTCCTCCGTCTCAGGGGAGGCAT 2677017 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| |||| || ||||| ||||| | || Sbjct 2677474 ATGCAGATCTTCGTGAAGACATTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCCTCT 2677415 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || || || || ||||| || || || || Sbjct 2677414 GACACCATTGACAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 2677355 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || | |||| || |||| |||||| Sbjct 2677354 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCCGACTACAAC 2677295 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | ||| | |||| ||||| Sbjct 2677294 ATCCAGAAGGAGTCAACCCTCCACCTTGTCCTCCGTCTCAGGGGAGGCAT 2677245 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || |||||||| || || ||| Sbjct 20341140 ATGCAGATCTTTGTTAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGATTTCC 20341081 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || || ||| |||| ||||| || || || ||| Sbjct 20341080 GACACCATCGACAATGTCAAAGCCAAGATCCAGGAC-AAGAGGGCATCCCCCCAGACCAA 20341022 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| ||| | || || | || | | || ||||| Sbjct 20341021 CAGAGGCTGATTTTTGCTGGCAAGCAACTAGAGGATGGCCGAACACTCGCTGACTACAAT 20340962 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||| | || | || | || ||| ||||||| || Sbjct 20340961 ATTCAAAAGGAATCCACCCTCCACCTTGTACTTCGCTTGAGGGGTGGGAT 20340912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| |||| |||||||| || || || Sbjct 20340685 ATGCAAATCTTTGTGAAGACCCTTACAGGAAAGACTATCACTCTTGAGGTAGAGAGCTCT 20340626 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || || ||||| || || || | || ||||| Sbjct 20340625 GATACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCTCTCCTGATCAG 20340566 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | |||||| || || ||||| |||||||| | || | | ||||||||| Sbjct 20340565 CAGAGGCTAATATTTGCTGGGAAACAGCTGGAAGACGGGCGCACATTGGCTGATTACAAC 20340506 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| || | || ||||| Sbjct 20340505 ATTCAGAAGGAGTCTACTCTTCACTTGGT 20340477 >seq5 Length=20807039 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||| | ||||| || || || || |||| Sbjct 6507426 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACGCTAGAGGTTGAGTCGTCA 6507367 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||| ||||| ||||| || ||||| || || || || Sbjct 6507366 GACACGATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 6507307 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | |||| || ||||| || |||| || | ||| | | ||||||||| Sbjct 6507306 CAGCGCCTCATATTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCAGATTACAAC 6507247 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||||| ||| |||| | ||| | || |||||| Sbjct 6507246 ATCCAGAAGGAGTCCACCTTGCATCTGGTGCTCCGTCTCCGTGGTGGC 6507199 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | ||||| ||||| || || |||| Sbjct 6507655 CATGCAGATTTTTGTCAAGACCCTGACAGGCAAGACCATTACACTTGAGGTTGAGTCGTC 6507596 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || ||||| ||||| |||||||| ||||| || || Sbjct 6507595 AGACACAATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATTCCACCAGACCA 6507536 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || ||| | ||| || | || ||||| Sbjct 6507535 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGCACCCTTGCTGACTACAA 6507476 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||||||||| || || Sbjct 6507475 CATTCAAAAGGAATCCAC 6507458 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || ||| | || Sbjct 6508110 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTTGAGGTTGAATCCTCT 6508051 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||| || || || ||||| || || Sbjct 6508050 GATACAATCGACAATGTCAAAGCCAAGATTCAGGACAAGGAGGGTATTCCACCTGACCAG 6507991 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| ||| | || ||| | ||| | | ||||||||| Sbjct 6507990 CAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGCCGCACCCTCGCAGATTACAAC 6507931 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| || ||||| ||| Sbjct 6507930 ATTCAGAAAGAGTCCACC 6507913 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| |||||| |||| || ||||| ||||| | || Sbjct 16643738 CATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 16643797 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| ||| ||||| ||||| || || || || || || || Sbjct 16643798 TGATACCATTGACAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCA 16643857 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || ||||| || | || || | ||| || | |||||||| Sbjct 16643858 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTTGCTGATTACAA 16643917 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 16643918 CATCCAGAAGGAGTCCACC 16643936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | ||||| || || || || | || Sbjct 16643967 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACACTCGAGGTTGAGTCATCA 16644026 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || ||||| || || || || Sbjct 16644027 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 16644086 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | || | | || |||||| Sbjct 16644087 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTCGCGGACTACAAC 16644146 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || ||||| | || | ||||||| Sbjct 16644147 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGCCTCAGGGGTGG 16644193 >seq8 Length=20165712 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| |||| || || || || || ||||||||| | || || ||||| || || |||| Sbjct 3967730 CATGAAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTC 3967671 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || || ||||| || || ||||| || || || ||||| Sbjct 3967670 AGACACCATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAAGGGATCCCTCCTGATCA 3967611 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACA 27165 |||||| | || | |||||||| || | || || || || || || | || |||| Sbjct 3967610 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGA-AGGCCGTACTCTTGCTGACTACA 3967552 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | ||||| ||||||||||| | ||| | || | ||| | || ||||| Sbjct 3967551 ATATTCAGAAGGAGTCGACTCTCCATCTTGTCCTCCGTCTCCGTGGTGG 3967503 >seq6 Length=21016138 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || | || Sbjct 18970233 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCT 18970292 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 18970293 GACACTATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 18970352 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| || | ||||||||| Sbjct 18970353 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAAC 18970412 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | || ||||| | || | || ||||| Sbjct 18970413 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTACGCCTCCGTGGTGG 18970459 >seq1 Length=32922458 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 9819485 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 9819544 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || || || Sbjct 9819545 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 9819604 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | |||| |||||| Sbjct 9819605 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCCGACTACAAC 9819664 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 9819665 ATCCAGAAGGAGTCGACCCTGCACCTGGT 9819693 >seq9 Length=15534364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| ||||| || || || |||||||||||||| |||| || ||||| |||||| Sbjct 9034638 CAGGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAGCAATTG 9034697 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || | || | | || ||||||||||| |||||||| || | || ||||| Sbjct 9034698 GAGGATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTC 9034757 Query 27198 TTGCGTTTGCGGGGTGGCA 27216 | || | ||||||||| Sbjct 9034758 CTCCGGCTCAGGGGTGGCA 9034776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918334762240