Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq10 104 3e-17 seq2 98.7 1e-15 seq9 96.9 4e-15 seq11 95.1 2e-14 seq12 91.5 2e-13 seq4 91.5 2e-13 seq5 89.7 6e-13 >seq3 Length=29602667 Score = 167 bits (184), Expect = 3e-36 Identities = 218/302 (72%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 186467 TGGATGAGTGCTATGAATGATCAAACAAACAGTCTGTTTCTACCAATAGGACCTGCTGAT 186526 ||| ||| |||||| ||||| | | || || || || ||||||| || | || Sbjct 16199644 TGGTTGAATGCTATTAATGAGAATAGTAATTCACTTTTCTTAACAATAGGGCCCGGGAAT 16199585 Query 186527 TTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAACTTTAATCCTAGTCAAG 186586 || || |||||||||||||||| || | || ||||| || || || || | || ||| Sbjct 16199584 TTCTTGGTTCATCATGCTATTGTTCTATGTTTGCATACAACTACATTGATATTTGTAAAG 16199525 Query 186587 GGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCA 186646 ||||| |||||||| |||| ||| | || |||||||| | ||||| |||||| Sbjct 16199524 GGTGCTTTAGATGCACACAGTTCCAAATTAATGCCAGATAAAATGGATTTTGGATATAGT 16199465 Query 186647 TTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTC 186706 || ||||| || || ||||| | || ||||||||||||| ||||| |||||| || || Sbjct 16199464 TTTCCTTGCGACGGCCCAGGTCGCGGCGGTACTTGTGATATTTCTGCTTGGGACGCGTTT 16199405 Query 186707 TATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGG 186766 ||| | | || |||||| || ||||| || | ||||| |||||||||||| ||| Sbjct 16199404 TATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTTACTTTTTATTGGCATTGG 16199345 Query 186767 AA 186768 || Sbjct 16199344 AA 16199343 >seq10 Length=15557830 Score = 104 bits (114), Expect = 3e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 185039 TGGTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAG 185098 |||| ||| | || || |||||||| ||| | |||||||| |||| || || || | | Sbjct 9138872 TGGTTTGGTATTGCTACCGCACATGATTTTAAAAGTCATGATGATATAACTGAGGA-ACG 9138814 Query 185099 T-TATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGT 185157 | | |||| || || |||| | ||||||| || | ||||| |||||||||||| Sbjct 9138813 TCTTTATCGGAACTTTTTTGTTTGTTACTTTGGGCAATTAGCAATAATCTTTCTATGGAC 9138754 Query 185158 TGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAG-ACC 185216 | || ||| | ||||| |||| |||||||| || ||| || | || ||| | | Sbjct 9138753 GTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTAAATCATAGATA-CAGAATC 9138695 Query 185217 CACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAA 185269 | ||| || | |||||| || ||| || ||||||||||||||||||||| Sbjct 9138694 CTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAA 9138642 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 186227 ATTATAAGTCACTTAAGTTGGGTATCACTATTCCTTGGATTCCATACTTTAGGAATCTAT 186286 || ||| ||| |||||||||| |||||||| ||||||||||| || || | ||| Sbjct 10236866 ATCATATCTCATTTAAGTTGGGCTAGTCTATTCCTAGGATTCCATACCTTGGGCCTTTAT 10236925 Query 186287 GTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGATATTAATTGAACCT 186346 || |||||||| || | | || |||||| ||| || | || || ||||| || ||| Sbjct 10236926 GTTCATAATGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTAATCGACCCT 10236985 Query 186347 ATATTTGCACAGTGGATACAGGCAGCATCA-GGTAAGATGATGTATGGATT 186396 |||||||| || | |||||| | || ||| ||||||| || ||||| || Sbjct 10236986 ATATTTGCCCAATTGATACAATCGGC-TCATGGTAAGACGACATATGGGTT 10237035 >seq9 Length=15534364 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 190380 TTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCT 190439 |||| || | |||||||| |||||| || |||||||| | |||||||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 190440 TAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATTTGCACAATGGCAT 190499 | || | | |||||| | | ||||| || | | |||||| | || ||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 190500 TCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGAT 190540 ||||| |||| || ||||| || ||||| |||||||||||| Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 12953941 >seq11 Length=21046960 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/211 (68%), Gaps = 33/211 (16%) Strand=Plus/Plus Query 184497 TATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAG 184556 |||| | ||||||||||| ||| | ||| ||||||||||||| || | ||| || ||| Sbjct 7557075 TATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAACTCCATTTCGGTAG 7557134 Query 184557 TAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGT-CTAT----------- 184601 | || ||||| || ||||||| |||||| ||||| |||||| |||| Sbjct 7557135 TCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAG 7557194 Query 184602 ------------------CAGGAGGTAACTTTGCTCAGAGTTCAATTACAATCAATGGAT 184643 |||| || |||||||| |||||||| ||||| || ||||| | Sbjct 7557195 GGGTGGTAACCCATATCACAGGGGGGAACTTTGCACAGAGTTCCATTACGATTAATGGGT 7557254 Query 184644 GGTTGAGAGACTTCTTATGGTCACAGTCAAG 184674 || | |||| ||||| ||| ||||||||| Sbjct 7557255 GGCTCCGAGATTTCTTGTGGGGACAGTCAAG 7557285 >seq12 Length=17761961 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 186634 TTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTGG 186693 ||| |||||| || ||||| || || ||||| | || ||||||||||||| ||||| Sbjct 2746783 TTTTGGATATAGTTTTCCTTGCGACGGCCCAGGTCGCGGCGGTACTTGTGATATTTCTGC 2746842 Query 186694 TTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGATTT 186753 |||||| || || ||| | | || |||||| || ||||| || | ||||| ||| Sbjct 2746843 TTGGGACGCGTTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATGGGTTACTTT 2746902 Query 186754 TTATTGGCACTGGAA 186768 ||||||||| ||||| Sbjct 2746903 TTATTGGCATTGGAA 2746917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 186751 TTTTTATTGGCACTGGAAGAACCTTGCTAGTTGGCAAGGTAATCAGGCACAATTCAATAC 186810 |||||||||||| ||||| || | | ||||| || || ||||||| ||| Sbjct 2741427 TTTTTATTGGCATTGGAAACACATCACATTATGGCAGGGCAACGTTTCACAATTTAATGA 2741486 Query 186811 ATCAGGAACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTGT 186870 ||| || ||| | ||||| ||||| |||||||| || ||| || | | | | Sbjct 2741487 ATCTTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACT 2741546 Query 186871 AATCACAGGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTT 186930 |||| || || | || ||||| ||||||| ||| || |||||||| ||||||||||| Sbjct 2741547 TATCAATGGATATAATCCTTTTGGGATGAATAGTCTATCAGTATGGGCGTGGATGTTCTT 2741606 Query 186931 GTTTGG 186936 ||||| Sbjct 2741607 ATTTGG 2741612 >seq4 Length=23326293 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 186964 GTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACA 187023 |||||| ||||| || | || |||||||| || ||||||||||| | || || || || Sbjct 15083166 GTTCCTAATTTCCTGCTGTGGATATTGGCAGGATGTAATTGAGACTTTAGCATGTGCTCA 15083107 Query 187024 TCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCAGTGGCACTTTCTAT 187083 | | | || || | || ||| || | | ||||||||| || ||||| ||||| || Sbjct 15083106 TGAGCGGACACCTTTGGCTAATTTAATTTGCTCGAGAGATAAGCCTGTGGCTCTTTCCAT 15083047 Query 187084 TGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGGATTTGTGCTTACCTATGC 187143 ||| ||||||||||| | || ||| | || ||| || | || | | | | || ||||| Sbjct 15083046 TGTGCAAGCAAGACTGGGGGGATTAGCTCACTTTTCCGTGGGTTATATATTCACTTATGC 15082987 >seq5 Length=20807039 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 191255 TTCTTTGCACCTTCATTTGGAGTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGT 191314 |||||||||| ||||| || ||||| || ||| ||| || || ||| | ||||| Sbjct 7585978 TTCTTTGCACGGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGA 7586037 Query 191315 TTCCACAATATTACACTCAACCCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGA 191374 || || ||| || | ||||| || || |||||||||||||| || | |||| | Sbjct 7586038 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 7586097 Query 191375 GCATTACTATGTGCCATTCATGGTGCTACAGTACAGAACACCTTGTATGAGGAC 191428 || || ||||| || |||||||| || || || | ||||| | | ||||||| Sbjct 7586098 GCTTTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC 7586151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631427105285920