Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 5e-13 seq12 82.4 7e-11 >seq11 Length=21046960 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34602 TCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| ||| ||||| || | || ||||||||| || |||||| | |||||||| || | | Sbjct 11751869 TCTTCCAGTTCTATGTTGAGAGTGGGGAGCTATCATGCCAGATGTATCAACGCTCTGCTG 11751928 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||||| | || || || ||||||||||| || |||| || ||||||||||| | Sbjct 11751929 ATATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACGTACATGATTG 11751988 Query 34722 CTCATGT 34728 |||| || Sbjct 11751989 CTCAAGT 11751995 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| ||||||||||| || |||| || ||||||||||| || || || | Sbjct 11751995 ACTTGAGCAATCATGTACGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGT 11751936 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || | || |||||||| | |||||| || ||||||||| || | || ||||| Sbjct 11751935 CCCATATCAGCAGAGCGTTGATACATCTGGCATGATAGCTCCCCACTCTCAACATAGAAC 11751876 Query 6737 TGGCAGA 6743 ||| ||| Sbjct 11751875 TGGAAGA 11751869 >seq12 Length=17761961 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 ||| || || || | |||||||||| | || |||||| | |||||||| || | || || Sbjct 9973100 CCAGTTTTATGTTGAGAATGGGGAGTTATCATGCCAGATGTATCAACGTTCTGCTGATAT 9973159 Query 34666 GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||| | ||||| || ||||||||||| ||| |||| || || | ||||| || || Sbjct 9973160 GGGGCTTGGGGTACCATTCAACATTGCATCATACTCTCTTCTGACTTGTATGATTGCACA 9973219 Query 34726 TGTCGTGGGGTTGGTTC 34742 || ||| ||| |||| Sbjct 9973220 AGT-GTGTGGTATGTTC 9973235 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| ||| || || || ||||| | || || |||| ||| |||||||||| Sbjct 9973235 GAACATACCACAC-ACTTGTGCAATCATACAAGTCAGAAGAGAGTATGATGCAATGTTGA 9973177 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 | || ||||| | |||||| || | || |||||||| | |||||| || | |||||||| Sbjct 9973176 ATGGTACCCCAAGCCCCATATCAGCAGAACGTTGATACATCTGGCATGATAACTCCCCAT 9973117 Query 6723 TCGCGACGTAGAATTGG 6739 || | || || || ||| Sbjct 9973116 TCTCAACATAAAACTGG 9973100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262332760640