Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 seq6 86.0 4e-12 >seq2 Length=26406337 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || ||||| || || || ||| |||| || |||||| | Sbjct 20340913 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAGACGATCACACTTGAGGTTGAAAGCTCT 20340854 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| ||||| || || ||||| || ||| | || || | Sbjct 20340853 GATACAATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATC 20340796 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | ||||| ||| | || |||| Sbjct 20340795 AGCAGAGGCTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGCACGTTGGCTGACTACA 20340736 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | ||||||||| ||||| | ||||| || Sbjct 20340735 ACATCCAGAAGGAGTCTACTCTTCATTTGGTTCTGCGTCTCCGTGGAGG 20340687 >seq6 Length=21016138 Score = 86.0 bits (94), Expect = 4e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| | || || |||||| || |||||||||| || || |||||||| Sbjct 17541014 GACAAAGAGGGTATCCCCCCAGATCAGCAAAGGCTAATTTTTGCTGGGAAGCAATTGGAA 17541073 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| || | |||||||||||||| |||||| || | ||||||||| || Sbjct 17541074 GATGGACGCACATTAGCTGATTACAACATCCAGAAAGAGTCAACGCTCCATTTGGTTCTG 17541133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862347955124