Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq6 98.7 9e-16 seq2 98.7 9e-16 seq1 96.9 3e-15 seq4 86.0 5e-12 >seq5 Length=20807039 Score = 104 bits (114), Expect = 2e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 || |||||| || | || ||| | ||| || || ||| || || || ||||| |||| Sbjct 6507652 CATGCCTCCCCTCA-GCCTAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATATTGTAAT 6507710 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | || | || || | || |||||||| ||||| || || |||||||||||||| || | Sbjct 6507711 CTGCCAACGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCAG 6507770 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 ||| | || ||| |||||| ||||||| || | ||| | | | ||| || ||| Sbjct 6507771 GGGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTCA-CGTTGTCGATCGTGTCCGAGGAC 6507829 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| ||||| | ||||| |||| || || |||||||| ||||| Sbjct 6507830 TCGACCTCCAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 6507882 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| | ||| ||| || || || || ||||| || | || || | || || Sbjct 6507217 CACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGGCCATCCTC 6507276 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| |||||||| || ||||||||||| | ||| | || ||| |||||| | Sbjct 6507277 CAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-T 6507335 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || | ||| | | | ||| || |||||| || || | ||| || ||| Sbjct 6507336 GAATCTTTGCCTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCTAGCGTAATGGTTT 6507395 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || |||| || || ||||||||||||||| Sbjct 6507396 TGCCGGTCAATGTCTTGACAAAGATTTGCATC 6507427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || ||||| ||||| || | | || || ||||| Sbjct 16643941 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTGCCATCCTCGAGCTGC 16643882 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| ||| | | Sbjct 16643881 TTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC-TGAATCTT 16643823 Query 39202 TG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || |||| | | | ||||| |||||||| || | |||||| | || || || Sbjct 16643822 TGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 16643763 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| ||||||||||| Sbjct 16643762 CAAGGTCTTAACGAAGATTTGCAT 16643739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 2856298 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 2856357 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | ||| | | ||| || Sbjct 2856358 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTT 2856417 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 2856418 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 2856476 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 2856477 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 2856516 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | || | || || ||| |||||| || || || ||||| || Sbjct 6507884 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 6507943 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| ||||| || ||||||||||| || || ||||||||||| | || Sbjct 6507944 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGA 6508003 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| || || ||||| | | | ||||| || || || Sbjct 6508004 ATACCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTATCAGAGGATTCAACC 6508063 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || | || || | || || || || || || |||||||| ||||||| ||| Sbjct 6508064 TCAAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTAC 6508116 >seq6 Length=21016138 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| || || |||| || ||||| ||||| ||||| Sbjct 18970196 CTCCTTCTGNATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 18970137 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| |||||| ||| || | || | ||| Sbjct 18970136 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GGCTTTAACGT 18970078 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| || ||||| || || | |||||| | || || ||||| || || | Sbjct 18970077 TGTCAATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCTGTCAGGGTCTTGA 18970018 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 18970017 CGAAGATCTGCAT 18970005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || || || || || ||| | || || Sbjct 18969758 CACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATCCTC 18969699 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| Sbjct 18969698 CAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 18969639 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | || || |||||| || || | ||||| | | Sbjct 18969638 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGGGTGATCGTCT 18969580 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| || || || ||||| ||||| Sbjct 18969579 TACCAGTCAAGGTCTTCACGAAGATCTGCAT 18969549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| || || || || || || || ||||| || || | || || Sbjct 18969986 CACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCCTC 18969927 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| Sbjct 18969926 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 18969867 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || || | ||| | | | ||| || ||||| || || | |||||| | | Sbjct 18969866 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATGGTCT 18969808 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||| ||||| Sbjct 18969807 TCCCAGTCAGGGTCTTGACGAAGATCTGCAT 18969777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| | || || | || |||||||| Sbjct 18969523 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGC 18969464 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 18969463 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 18969404 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || ||||| || || | ||||| | || || || Sbjct 18969403 GCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTG 18969344 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || || || |||||||| ||||||| Sbjct 18969343 AGTGTCTTCACAAAGATCTGCATCT 18969319 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| || | |||| || ||||| ||||| ||||| Sbjct 2677055 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCGGCAAA 2677114 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| |||||| ||| || |||| ||| Sbjct 2677115 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 2677173 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || || ||||| || || | Sbjct 2677174 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTGA 2677233 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 2677234 CAAAGATCTGCAT 2677246 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | ||||| || || || ||| || || || || ||||| || Sbjct 20340459 CCTCCTCTGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCC 20340518 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || |||| || |||||||| || |||||||| || | |||||| || | | Sbjct 20340519 AATGTGCGCCCGTCTTCCAGCTGTTTCCCAGCAAATATTAGCCTCTGCTGATCAGGAGAG 20340578 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | ||| |||||| ||| || |||| | | | ||||| |||| || Sbjct 20340579 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTATCAGAGCTC---TCT 20340635 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || | |||||| | ||||| || || || || ||||||||||||||| Sbjct 20340636 ACCTCAAGAGTGATAGTCTTTCCTGTAAGGGTCTTCACAAAGATTTGCATC 20340686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||||||| || | | || || ||||| ||||| || || Sbjct 2677283 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAA 2677342 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | ||| | || ||| || ||| ||| || |||| ||| Sbjct 2677343 GATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTAGCCTTGA-CGT 2677401 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || |||||||| || | |||||| | || || |||| || || | Sbjct 2677402 TGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCA 2677461 Query 39272 CAAAGATTTGCATCTTTA 39289 | ||||| ||||||| || Sbjct 2677462 CGAAGATCTGCATCTGTA 2677479 >seq1 Length=32922458 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 9819700 GCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 9819641 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || |||||||||||||| | || | | ||| || Sbjct 9819640 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATCCCCTCCTT 9819581 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 9819580 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9819522 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 9819521 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9819482 >seq4 Length=23326293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| |||||||| || || | || || ||||| Sbjct 20245638 TGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCATCCTCCAGCTGC 20245579 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| || |||||||||||||| |||||| | || || ||||| ||| || Sbjct 20245578 TTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG-ATGCCTTCCTTGTCTTGGATCTT 20245520 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || | ||| | | | || || |||||| || |||| ||||| | || || | Sbjct 20245519 GGCCTTCA-CGTTGTCGATGGTGTCAAACGACTCAACCTCCAAAGTGATGGTCTTGCCAG 20245461 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| ||||| ||||| Sbjct 20245460 TGAGGGTCTTAACGAAGATCTGCAT 20245436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545537178956