Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq5 102 6e-17 seq8 98.7 7e-16 seq9 93.3 3e-14 seq2 89.7 3e-13 seq4 82.4 5e-11 >seq6 Length=21016138 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| || Sbjct 18970005 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 18970064 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || ||||| | || | | ||||| || || | || || || || Sbjct 18970065 GACACGATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 18970123 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || ||||| |||| ||||| | | || ||||| Sbjct 18970124 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCTGACTACAA 18970183 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 18970184 CATNCAGAAGGAGTCTAC 18970201 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || ||||| ||| | Sbjct 18970233 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCT 18970292 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | ||||| || || | ||||| || || Sbjct 18970293 GACACTATTGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCGCCTGACCA 18970351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || ||||| || | ||||| | | |||||||| Sbjct 18970352 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAA 18970411 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 18970412 CATCCAGAAGGAATCCAC 18970429 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| || Sbjct 18969777 ATGCAGATCTTCGTCAAGACCCTGACTGGGAAGACCATCACGCTCGAGGTCGAGTCCTCG 18969836 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 18969837 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 18969896 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || ||||| || | |||||| | | || |||||| Sbjct 18969897 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCTGACTACAAC 18969956 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 18969957 ATCCAGAAGGAATCCAC 18969973 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || |||||||| || | |||| ||||| || || ||| ||||| Sbjct 17541014 GACAAAGAGGGTATCCCCCCAGATCAGCAAAGGCTAATTTTTGCTGGGAAGCAATTGGAA 17541073 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | |||||| |||| ||||||||||| || |||||||| || | ||||| ||| | Sbjct 17541074 GATGGACGCACATTAGCTGATTACAACATCCAGAAAGAGTCAACGCTCCATTTGGTTCTG 17541133 Query 23824 AGG 23826 ||| Sbjct 17541134 AGG 17541136 >seq5 Length=20807039 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || || || ||||| ||| | Sbjct 6508110 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTTGAGGTTGAATCCTCT 6508051 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | || | || ||||| || ||| | || || || || Sbjct 6508050 GATACAATCGACAATGTCAAAGCCAAGA-TTCAGGACAAGGAGGGTATTCCACCTGACCA 6507992 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||||| || |||| ||||| | | |||||||| Sbjct 6507991 GCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGCCGCACCCTCGCAGATTACAA 6507932 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 6507931 CATTCAGAAAGAGTCCAC 6507914 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || ||||| ||||| ||| || Sbjct 16643511 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTCGAGGTTGAGTCCTCG 16643570 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || || | || || || || Sbjct 16643571 GACACCATTGACAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGAATCCCACCGGACCA 16643629 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || ||||| | |||||| | | || ||||| Sbjct 16643630 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGCACTCTTGCTGACTACAA 16643689 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16643690 CATCCAGAAGGAGTCCAC 16643707 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || || || || ||||| || | Sbjct 6507654 ATGCAGATTTTTGTCAAGACCCTGACAGGCAAGACCATTACACTTGAGGTTGAGTCGTCA 6507595 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || ||||| || Sbjct 6507594 GACACAATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGCATTCCACCAGACCAG 6507535 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| |||||| | | || |||||| Sbjct 6507534 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGCACCCTTGCTGACTACAAC 6507475 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 6507474 ATTCAAAAGGAATCCAC 6507458 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || ||||| || || || || ||||| || | Sbjct 6507426 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACGCTAGAGGTTGAGTCGTCA 6507367 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| ||||| || || | || || || || Sbjct 6507366 GACACGATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 6507307 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | |||||||| ||||| || ||||| || | ||||| || | ||||||||| Sbjct 6507306 CAGCGCCTCATATTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCAGATTACAAC 6507247 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || |||||||| || ||| Sbjct 6507246 ATCCAGAAGGAGTCCACCTTGCAT 6507223 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||| | || || || || ||||| || || || || || | Sbjct 16643739 ATGCAAATCTTCGTTAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 16643798 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | || ||||| || || | || ||||| || Sbjct 16643799 GATACCATTGACAATGTCAAGGCAAAGA-TTCAGGACAAGGAGGGAATTCCCCCAGACCA 16643857 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | | ||| | | |||||||| Sbjct 16643858 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTTGCTGATTACAA 16643917 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 16643918 CATCCAGAAGGAGTCCAC 16643935 >seq8 Length=20165712 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| ||||| || |||||||| || || |||||||| || || ||||| || | Sbjct 3967729 ATGAAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTTGAGTCGTCA 3967670 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || || || ||||| | || || ||||| Sbjct 3967669 GACACCATTGACAATGTGAAGGCGAAGA-TTCAGGATAAGGAAGGGATCCCTCCTGATCA 3967611 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || || | || ||| | | || ||||| Sbjct 3967610 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGAAGGCCGTACTCTTGCTGACTACAA 3967551 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 3967550 TATTCAGAAGGAGTCGAC 3967533 >seq9 Length=15534364 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || ||||||||||||||||| |||||||| ||||| ||| |||| Sbjct 9034641 GACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAGCAATTGGAG 9034700 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | |||||| | | || |||||||| || || ||||| || Sbjct 9034701 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAGTCAAC 9034744 >seq2 Length=26406337 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || | | Sbjct 2676790 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGAGCTCT 2676731 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | ||||| || || Sbjct 2676730 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCGCCGGACCAG 2676671 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| |||| || || | | ||| |||||| Sbjct 2676670 CAGCGCCTGATTTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTCGCCGACTACAAC 2676611 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2676610 ATCCAGAAGGAGTCCAC 2676594 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || ||||| || |||||||| || || || | | Sbjct 20340685 ATGCAAATCTTTGTGAAGACCCTTACAGGAAAGACTATCACTCTTGAGGTAGAGAGCTCT 20340626 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| || || | | || ||||| Sbjct 20340625 GATACAATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGGATCTCTCCTGATCA 20340567 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||||||||| || ||||| |||||||||| ||||| || | |||||||| Sbjct 20340566 GCAGAGGCTAATATTTGCTGGGAAACAGCTGGAAGACGGGCGCACATTGGCTGATTACAA 20340507 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 20340506 CATTCAGAAGGAGTCTAC 20340489 >seq4 Length=23326293 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| | || || || ||| | Sbjct 20244754 ATGCAGATTTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTAGAGTCCTCC 20244813 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| ||||| || || | || || || || Sbjct 20244814 GACACGATTGACAATGTGAAGGC-TAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCA 20244872 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || ||||| ||||| || || || || | ||||| | | || || || Sbjct 20244873 GCAGCACCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTG--GACTATAA 20244930 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 20244931 CATTCAGAAGGAATCCAC 20244948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096