Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 seq6 93.3 6e-14 >seq2 Length=26406337 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||||||||||| | || || | | ||| ||||||||||| ||| ||||||| Sbjct 25078968 TCTCTTTCATATTTCTTGTACAAATGCTGAAACTCATCTCCCCAGCAGTCAGCCAAACCC 25078909 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| |||||| ||||| | || ||||| || |||| | || |||| || ||| ||| Sbjct 25078908 GGAGCTTCATTGGGACAAAACAGAGACCAGTCCCCATTATTCTGCACCCTTTCCATGAAG 25078849 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||||| || ||||| |||||| || ||||||| Sbjct 25078848 AGATCCGGAATCCAGAGAGCATAGAAAAGATCTC 25078815 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/229 (69%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| || Sbjct 25078550 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGCAGCATGGGAACAATTCCA 25078491 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| ||| | |||||| ||| || Sbjct 25078490 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTTGCTCTAATATTGTGAATTGAG 25078431 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTC---AATGTGTC 76926 | || ||||| || || ||||| | ||| |||||| || | | || || Sbjct 25078430 ACACCAATTCCACCAGCACATTT----GCTTATGGTAGCACA---TTCCGAGAGAGTATC 25078378 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || ||||| || |||||||| ||||| | || || |||||| Sbjct 25078377 ATAAATTCCCTCGATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 25078329 >seq6 Length=21016138 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | | ||| |||| ||| ||| Sbjct 2855159 CCACCCTGATCAACATAACGGGCAGTATCATTGAACACACGTAGCATAGGAACAATCCCG 2855218 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| ||||| || ||| || |||||||| || ||| Sbjct 2855219 TTGGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAT 2855278 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| || |||||| |||| |||||||||||| Sbjct 2855279 ACACCAATCCCTCCAGCAGATTTGCTTATGGCAGCACATTCCTTCAGTGTGTCATAGATC 2855338 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| |||| | ||| ||||| || Sbjct 2855339 CCCTCGATGCTGTCATCTTTCATACAGATAAGGAAACAACT 2855379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934293059840