Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 seq8 138 1e-27 seq7 100 4e-16 seq5 98.7 1e-15 seq3 82.4 9e-11 >seq9 Length=15534364 Score = 141 bits (156), Expect = 1e-28 Identities = 137/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 183911 TTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCC 183970 |||| || | |||||||| |||||| |||||||| ||||||||| | ||||||||| Sbjct 12953781 TTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCT 12953840 Query 183971 TTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCAT 184030 | ||||||||||| || || || || ||||| |||||| | ||| |||| |||||||| | Sbjct 12953841 TGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTT 12953900 Query 184031 TTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 184085 | ||||| || || || || |||||||| || | ||||| | |||||||| || Sbjct 12953901 TCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAG-CAAGGTCGCGT 12953954 >seq8 Length=20165712 Score = 138 bits (152), Expect = 1e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 186783 CTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGAT 186842 || ||||| ||||| ||||| ||||||||||| ||||| | | ||||| || ||| Sbjct 4128628 CTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGAT 4128687 Query 186843 CCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGG 186902 ||||| || ||||| ||||| ||||| ||||| || || || || ||| | ||||| ||| Sbjct 4128688 CCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGG 4128747 Query 186903 ATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGA 186962 |||||| | |||||| || |||||||| || |||| ||||| || || | ||| | Sbjct 4128748 ATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGT 4128807 Query 186963 GGCAACGCTCT 186973 || |||||||| Sbjct 4128808 GGAAACGCTCT 4128818 >seq7 Length=22540073 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 183285 CTGCTTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACC 183344 || || ||| |||||||| |||| || |||| | || || || || || | ||| || Sbjct 5747998 CTTCTGCATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCC 5748057 Query 183345 CGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTC 183404 || || || | | ||||||||||| || ||||||||||| || ||||| |||| Sbjct 5748058 TGTCTCTAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTC 5748117 Query 183405 CAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCT 183464 || || ||| | ||||| || || || |||||||| ||||| | ||||||| ||| Sbjct 5748118 TGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCT 5748177 Query 183465 GTATAACGGTGGTCCTTA 183482 | || |||| |||||| Sbjct 5748178 ATGCAATGGTGATCCTTA 5748195 >seq5 Length=20807039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 186435 TTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACG 186494 ||||| || ||||| || ||| ||||| | | ||| |||||||||| || || |||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 186495 TTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCA 186554 ||||| ||||| || |||||||| || || || | | || | ||| |||| | || Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 186555 ATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGA 186598 || ||||| | || || ||||| ||||| | ||| || || || Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGA 7586156 >seq3 Length=29602667 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || || ||||||||||| || || |||| || ||| ||||| |||||||| Sbjct 28695881 TACATCCTCGATGCTGCTGAGACCGCTGGTGTTGAGCTGCCCTACTCGTGCCGTGCTGGA 28695940 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 || || || |||||||| || || ||| ||| ||| || || || || ||| ||| Sbjct 28695941 GCATGCTCTACCTGTGCCGGCAAGATTAAGACTGGCAAGGTCGACCAGTCGGATGGATCA 28696000 Query 171120 TTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA 171179 |||||||| |||| ||| ||| || | | ||||| |||||||| || || | | Sbjct 28696001 TTCCTTGACGATGCGCAGCAGGAAGACGGCTATGTGCTGACATGCGTCTCCTACCCCAAA 28696060 Query 171180 AGTGATTGTGTAATCTTGACTGAACAGGAAGAGAACCTTT 171219 || || || ||| ||| | |||||| |||||| Sbjct 28696061 TCGGACTGCGTCATCCATACTCACAAGGAAGGAGACCTTT 28696100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070306689440