Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq12 86.0 7e-12 >seq7 Length=22540073 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 164023 CATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGC 164082 ||| || |||||||||| || |||| | || || ||||| || | ||| || ||| | Sbjct 5748004 CATTATTGCCTTCATCGCAGCCACTCCAATAGATATTGATGGTATTCACGAGCCTGTCTC 5748063 Query 164083 TGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGC 164142 | ||| | | ||||||||||| || ||||||||||| |||| ||| ||||| || Sbjct 5748064 TAATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGC 5748123 Query 164143 TATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAA 164202 ||||| ||||||| ||||| || |||||||| ||| | | || || | ||| | ||| Sbjct 5748124 GATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTAGCTATGCAA 5748183 Query 164203 CGGTGGTCCTT 164213 |||| ||||| Sbjct 5748184 TGGTGATCCTT 5748194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 163986 TGATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGC 164043 ||||||| |||| ||| | | | || ||| | ||| || || ||||||||||||| || Sbjct 5747382 TGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCAGC 5747439 Query 164044 TCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAA 164103 ||||| || || || ||||| || ||||| || || ||||||| | | |||||||| Sbjct 5747440 CCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAA 5747499 Query 164104 CAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCC 164163 ||||||| || | ||| ||| ||||| | ||| | ||||||| ||||| Sbjct 5747500 ------CATCTCTAGTTCCATTAATCCTGCTTCTGCATCAATCAGATTGCACTTTTACCC 5747553 Query 164164 CATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTT 164213 | ||||| || ||| | | || | | | ||||| |||||||||| Sbjct 5747554 AAAATGGGAGGCTGCATCTGTTGATCGGTAGTTATACAATGGTGGTCCTT 5747603 >seq12 Length=17761961 Score = 86.0 bits (94), Expect = 7e-12 Identities = 171/253 (68%), Gaps = 19/253 (8%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| || || ||||| ||||| || ||| | || |||| |||||||| || || Sbjct 6069320 TTCTGCAATAGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 6069379 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCT 164047 ||||| |||| ||| | ||| || ||||||||||||| || ||| Sbjct 6069380 ATGAT-CCCT-----CTG------------TATTT-ATTATCGCCTTCATCGCAGCCCCT 6069420 Query 164048 CCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAAC 164107 || || | || |||| || | || || || || |||| | | ||||||||||| Sbjct 6069421 CCAGTACATATTGATGTTATTTGTGAGCCTGTTTCTTGTTCTTTACTTTATGGAAACAAT 6069480 Query 164108 ATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATC 164167 || |||||| || | |||| ||| || | || ||||| ||||||| || | ||| Sbjct 6069481 ATTATCTCTAGTACCATTATTCCTATTTTTGCGGCGATCGGATTGCACTTTTAGCTAATC 6069540 Query 164168 TGGGAAGCAGCAA 164180 |||||||| |||| Sbjct 6069541 TGGGAAGCCGCAA 6069553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654316351840