Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leersia_20perrieri_20[genbank_20GCA_5F000325765.3_202014-02-21] 12 sequences; 266,687,832 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq9 113 5e-20 seq5 111 2e-19 >seq9 Length=15534364 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 170078 ATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGG 170137 ||||||||||| ||| || |||||||| ||||| | ||||||||| | || || ||| Sbjct 12953792 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12953851 Query 170138 CCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAAC 170197 ||||| || || || |||||||| ||| | ||| | || ||||| |||||||| ||| Sbjct 12953852 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 12953911 Query 170198 GGTTTCAACTTCAACCAGTC 170217 || ||||| |||||||| || Sbjct 12953912 GGATTCAATTTCAACCAATC 12953931 >seq5 Length=20807039 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| || ||||| || || || ||| | |||||| | ||||| || || || ||||| Sbjct 7585993 TTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACG 7586052 Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 |||| ||||||||||||||||| ||||| || | | |||| || ||||| | || Sbjct 7586053 TTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTTTGCTATGCGCT 7586112 Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTT 171247 |||||||| | || || || || ||| | | ||| || |||||| ||||| ||||| Sbjct 7586113 ATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTT 7586171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592198311170240