Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12173 143 6e-29 seq88849 131 4e-25 seq353702 129 1e-24 seq506579 109 1e-18 seq92891 100 6e-16 seq506698 98.7 2e-15 seq461044 98.7 2e-15 seq369037 98.7 2e-15 seq311992 98.7 2e-15 seq192151 98.7 2e-15 seq51821 98.7 2e-15 seq44212 98.7 2e-15 seq42715 98.7 2e-15 seq15078 98.7 2e-15 seq3936 98.7 2e-15 seq2528 98.7 2e-15 seq207 98.7 2e-15 seq169297 95.1 3e-14 >seq12173 Length=3197 Score = 143 bits (158), Expect = 6e-29 Identities = 309/459 (67%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 1046 TTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTC 1105 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||| | Sbjct 1106 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTG 1165 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| || |||||||| | ||| | |||| | || | || ||| Sbjct 1166 CTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCCTGCCTCCTCTACGGCCTCCTC 1225 Query 230353 CAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACG 230410 | | |||||| || | || | ||| | ||| | | || || || || | || Sbjct 1226 AACAGCAAGCTTGACGAGTCCCGC--GTCCGCGAGATCGTCGCCGACGCCGTCGACATCG 1283 Query 230411 AAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTA 230470 | | ||||||||| || ||||| | || || ||| | ||||||||||| | || | Sbjct 1284 AGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCCGGCCTCA 1343 Query 230471 TGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAG 230530 |||| |||||||| || ||||| || |||||| | | | || || || | || || Sbjct 1344 TGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTCGGCTGCGCCAAGA 1403 Query 230531 TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCA 230590 |||||||| | ||||| || | | ||||||||||| || || || || ||||||| Sbjct 1404 TGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCA 1463 Query 230591 ACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||| || ||||||||| | ||||| ||| |||||| Sbjct 1464 ACTTCTTTGAGAAGCGTGTCGGCGACTACCAGAAGGCCT 1502 >seq88849 Length=1251 Score = 131 bits (144), Expect = 4e-25 Identities = 270/397 (68%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 434 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAAC 375 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 ||| ||||| ||||||||||| ||||| | |||| | || | || | Sbjct 374 GAGCTCATCTCACGCGACGAGGGGCTCCACTGCGACTTCGCCTGCCTCCTCTACGAGATC 315 Query 230350 CTCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 |||| | |||||| || | ||| | || | | || | | || || ||||| | Sbjct 314 CTCCGGGGCAAGCTGGACGAGTCGCGCGTGTTCGAGA--TCGTCAGGGAGGCTGTTGACA 257 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| |||||| | || ||||| | ||||| ||| || | |||||||||| || Sbjct 256 TCGAGCGCGAGTTCGTCTGCGACGCGCTGCCATG-CGCGCTCGTCGGCATGAACGGCGAC 198 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| ||||||||| | | | || || || | || Sbjct 197 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCGGC 138 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 | | |||||| | | |||||||| | | ||||||||||| || || || || ||| Sbjct 137 AGGCTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAG 78 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||| ||||| ||||| ||| | || || |||| Sbjct 77 ACCAACTTTTTCGAGAAGCGCGTCGGCGAGTACCAGA 41 >seq353702 Length=449 Score = 129 bits (142), Expect = 1e-24 Identities = 276/404 (68%), Gaps = 9/404 (2%) Strand=Plus/Plus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 16 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAAC 75 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAA 230348 ||| ||||| |||||||| || || || | |||| || || | | || | Sbjct 76 GAGCTCATCTCACGCGACGAAGGGCTGCACTGCGACTTCG-CGTGCCTCCTCTACGAGAT 134 Query 230349 GCTCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 |||| | |||||| || | || | ||| | ||| | | || |||||||| Sbjct 135 CCTCCGGGGCAAGCTGGACGAGTCCCGC--GTCTTCGAGATCGTCAGGGAGGCAGTTGAC 192 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGA 230465 | ||| |||||| | || ||||| | || || ||| || |||||||||||| || Sbjct 193 ATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCGTG-CGCGCTCGTTGGCATGAACGGCGA 251 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| | ||||||||||| ||||| ||||||||| | | | || || || | || Sbjct 252 CCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGGTGCGG 311 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 | | |||||| | | |||||||| | | ||||||||||| || || || || || Sbjct 312 CAGGCTCTACAACGCCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAA 371 Query 230586 GACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||||||||| ||||| ||||| ||| | || || ||| |||||| Sbjct 372 GACCAACTTTTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCT 415 >seq506579 Length=309 Score = 109 bits (120), Expect = 1e-18 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||||| |||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 81 AAACGCTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 22 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 21 GTTCGAGCCCCACGGTGGGC 2 >seq92891 Length=1216 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 74 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 14 CCCCACGGTGGGC 2 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 230 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 171 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 170 CCCCACGGTGGGC 158 >seq506698 Length=309 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13 CCCACGGTGGGC 2 >seq461044 Length=347 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 341 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 282 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 281 CCCACGGTGGGC 270 >seq369037 Length=433 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 361 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 420 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 421 CCCACGGTGGGC 432 >seq311992 Length=498 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 56 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 115 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 116 CCCACGGTGGGC 127 >seq192151 Length=719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 332 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 273 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 272 CCCACGGTGGGC 261 >seq51821 Length=1699 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 309 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 250 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 249 CCCACGGTGGGC 238 >seq44212 Length=1842 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 312 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 253 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 252 CCCACGGTGGGC 241 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 812 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 753 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 752 CCCACGGTGGGC 741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1128 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1069 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1068 CCCACGGTGGGC 1057 >seq42715 Length=1874 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 73 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13 CCCACGGTGGGC 2 >seq15078 Length=2953 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2437 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2378 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2377 CCCACGGTGGGC 2366 >seq3936 Length=4580 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4263 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4322 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4323 CCCACGGTGGGC 4334 >seq2528 Length=5126 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1043 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 984 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 983 CCCACGGTGGGC 972 >seq207 Length=8668 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4572 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4513 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4512 CCCACGGTGGGC 4501 >seq169297 Length=790 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| || || |||| || |||||||||||||||||||| Sbjct 790 CCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 731 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 730 CACGGTGGGC 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1048795015973400