Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq88849 95.1 1e-14 >seq88849 Length=1251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 283/432 (66%), Gaps = 5/432 (1%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | |||||||| | ||| || ||||| || || || Sbjct 328 AGGCAGGCGAAGTCGCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTG 387 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || ||| ||| || || || ||| Sbjct 388 AGGCCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 447 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||||||| |||| ||||| | | || || ||| | | || | || Sbjct 448 AAGATGCCCTCGACGCATGCGAACGCCACGATGCGCTCCGCGAAGCGCTCGCCGCCGT-- 505 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||| || |||| ||||| || | | | || || || ||||| Sbjct 506 CGA-TCCAGCGGAGCGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGATGGCG 564 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | || || || |||| || || || |||||||| || |||| Sbjct 565 CGGAAGAGGCGGTCCTTCTCGGCGGCGTCGCGGATGTAGGTCTCGATGAGCAGCGAGTAC 624 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || || ||||| |||||||| ||||| ||||| || ||||| ||| || || || || Sbjct 625 ATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCC 684 Query 17321 ATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | || || || || | ||| || ||| || || ||| ||||||||||||| || Sbjct 685 ACCTGCACGTCGGACAT-GAAGCGGGACGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 743 Query 17380 GGCGAAAAACGC 17391 |||||| || || Sbjct 744 GGCGAAGAAGGC 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513235868402400