Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq343112 98.7 1e-15 seq30271 89.7 6e-13 >seq343112 Length=461 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || ||| |||||| | || || |||||||| | | | || | || || || || Sbjct 371 TAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCCGCATAGTAGATATTT 312 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 || || || | ||| || || | || |||||| |||| || |||||||| | | | Sbjct 311 TCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAATGGATATCTCATTAAT 252 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 ||||| || || || | |||||| |||||||||||||| || | ||| | | | || || Sbjct 251 ATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGATGACGCATGTTCGAA 192 Query 53579 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 |||| || || || ||||||| ||| || || ||||| || ||||| ||| || Sbjct 191 TTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTGTTGAGATTTTTG 135 >seq30271 Length=2204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||||| || | ||| |||| ||| |||| | ||||| |||| ||| || Sbjct 12 TCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATAGGAACAATCCC 71 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| || || || || ||||| || ||| | |||||||| || | ||| Sbjct 72 ATTGGATGTCCCGTTAGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGTACTGA 131 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || ||| || | ||||||||||| Sbjct 132 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTGAGAGTATCATAGAT 191 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || ||||| || ||||| | || |||||||| Sbjct 192 TCCCTCGATGCTATCGTCTTTCATGCAGATGAGGAAACAGCT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588777531806400