Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq12510 125 6e-24 seq113513 109 5e-19 seq6868 104 2e-17 seq5401 104 2e-17 seq385372 100 2e-16 seq213696 98.7 8e-16 seq88253 96.9 3e-15 seq84174 93.3 4e-14 seq37865 93.3 4e-14 seq138762 89.7 4e-13 seq117604 89.7 4e-13 seq59492 89.7 4e-13 seq17435 87.8 2e-12 seq742 84.2 2e-11 seq307656 82.4 6e-11 seq83756 82.4 6e-11 >seq12510 Length=3164 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | ||||||||||| || ||||| || |||||| Sbjct 3101 CCACCACGCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCC 3042 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || || || | || |||| | |||||||| ||| Sbjct 3041 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGG 2982 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||| |||||| || ||| | Sbjct 2981 ATGCACTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACT 2922 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || || ||||| || ||||| Sbjct 2921 TCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq113513 Length=1062 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | |||||||||||||| ||||| ||||| || Sbjct 1011 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCG 952 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| ||||| ||| | || || | |||||||||| | Sbjct 951 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTG 892 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | | |||| Sbjct 891 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 832 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || ||||||||||| || | || || || || || ||||| || Sbjct 831 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq6868 Length=3892 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| || |||||||| || ||||| ||||| || Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| || || || | || || | |||||||||| || Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || || || | | ||| || || | | |||| Sbjct 3002 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 3061 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || ||||||||||| || | || || || || || ||||| || Sbjct 3062 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq5401 Length=4188 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||||||||| || ||||| || | ||||| ||||| ||||| Sbjct 4129 GTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 4070 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| || | ||| ||||| || ||||| || Sbjct 4069 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTG 4010 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || || |||| |||| ||| |||||||||||||| | || Sbjct 4009 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 3950 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 3949 TTCACGAAGATCTGCAT 3933 >seq385372 Length=416 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | |||||| | || | ||||||||||| || | ||| ||||| || Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| ||| ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || ||||||| || || | | ||| || || | | |||| Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 30 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 |||| || ||||||||||| || Sbjct 29 TCCAGCGTGATGGTCTTGCCCGT 7 >seq213696 Length=664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||| |||||||| || || || ||||| || ||||| Sbjct 429 AGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCC 370 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTC---TCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 |||||||| ||||| || | || |||| |||||||||| || | ||||||||| Sbjct 369 TCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTA 310 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || |||||| || || | | | | || ||| || ||| || | ||| ||| Sbjct 309 TCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATG 250 Query 21141 GTCTTGCCGG 21150 |||||||||| Sbjct 249 GTCTTGCCGG 240 >seq88253 Length=1256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | |||||||| ||||| ||||||||||| || ||||| || || Sbjct 1137 GTTTCCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATC 1196 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||| ||||| || | ||||| ||||| ||||| || | || || | |||||||||| Sbjct 1197 CGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCC 1254 >seq84174 Length=1294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | ||||||||||||||| |||||||| ||||||| ||| | | ||| Sbjct 125 AGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGCCCATCC 66 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | ||||| |||||||| || || | || |||||||| Sbjct 65 TCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCCTTGTC 7 >seq37865 Length=1986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||| | |||| ||||||||||| || | ||| ||||| || Sbjct 137 CCGCCGCGCAGGCGGAGCACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCG 78 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| |||||||| | || || | ||||||||| || Sbjct 77 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 18 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 17 ATGCCCTCCTTGTC 4 >seq138762 Length=915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | |||||| | |||| ||||||||||| || | ||| ||||| | Sbjct 711 CCCCCACGTAGGCGGAGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAG 652 Query 21009 AGGGTTTGGGCGTCCTCCAGCTG-TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || ||||||| ||||| ||| || || | || || | ||||||| || || Sbjct 651 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGG 592 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||| | |||||| |||||| || || | | | | || || | | |||| Sbjct 591 GATGCCCTGCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCAC 532 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || ||||||||||| || | || || || || || ||||| || Sbjct 531 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq117604 Length=1036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| || |||||||| || ||||| ||||| ||| Sbjct 903 CCACCACGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCC 962 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || || || | || || | |||||| ||| || Sbjct 963 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGA 1022 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 1023 ATGCCCTCCTTGTC 1036 >seq59492 Length=1577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 302 CCGCCGCGGAGGCGGAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 243 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 || || || | ||||||||||| || || ||| | || || | |||||||||| Sbjct 242 AGCGTCCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCC 189 >seq17435 Length=2785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||||| ||||||| ||| | ||||||||| || || ||||| || || | Sbjct 1842 TTCCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAG 1783 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | | || |||| ||| || || ||| |||| || || |||||||| || Sbjct 1782 CCAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGG 1723 Query 21067 GCACGCCTTCCTTGTC 21082 | | |||||||||||| Sbjct 1722 GGATGCCTTCCTTGTC 1707 >seq742 Length=6773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| ||||||| |||||| ||||||| | || | ||||| |||||||| ||| Sbjct 5843 GTGGACTCCTTGTGAATGTCATAGTCGGCCAGGGCTCGGCCATCCTCAAGCTGTTT-CCC 5785 Query 21039 GCATAA-ATAAGTCTCTGCTGGTCC 21062 | | || ||||| | |||||||||| Sbjct 5784 GGAGAAGATAAGGCGCTGCTGGTCC 5760 >seq307656 Length=504 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || ||||| || ||||| ||||| ||||| | | ||||| | |||||||| Sbjct 497 AGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCC 438 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||||||||| || | ||||||||||| |||||| ||| Sbjct 437 GGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTT 378 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 ||| | | | | || ||| | ||| || | |||||| || || || || || || Sbjct 377 CACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGT 318 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 317 CTTGACAAAGATTTGCAT 300 >seq83756 Length=1298 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 ||||| ||||| || || ||| | || || | |||||||||| || | ||| |||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || ||||||| || || | | ||| || ||| || |||| || | ||| ||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||||| | || || ||||| || ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418830848524880