Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq112278 93.3 3e-14 seq13106 89.7 4e-13 >seq112278 Length=1071 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || || |||||||| || | |||| ||| |||||||| || ||||| || ||| Sbjct 511 ACTTGCGCAATCATACATGTCAGAAGAGCATAAGACGCAATGTTGAATGGCACGCCAAGT 452 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAA 97238 ||||| |||||||| | |||||||| |||||| || | || ||||| | || |||||||| Sbjct 451 CCCATGTCAGCTGAGCGTTGATATATCTGACATGATAACTCTCCATTCTCA-ACATAAAA 393 Query 97239 CTG 97241 ||| Sbjct 392 CTG 390 >seq13106 Length=3111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 || || || |||||||| || | |||| ||| |||||||| || ||||| || ||| Sbjct 2517 ACTTGCGCAATCATACATGTCAGAAGAGCATAAGATGCAATGTTGAATGGCACGCCAAGT 2458 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAA 97238 ||||| |||||||| | |||||| | |||||| || | || ||||| | || |||||||| Sbjct 2457 CCCATGTCAGCTGAGCGTTGATACATCTGACATGATAACTCTCCATTCTCA-ACATAAAA 2399 Query 97239 CTG 97241 ||| Sbjct 2398 CTG 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343968436862600