Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq307656 143 2e-29 seq5401 125 6e-24 seq113513 122 7e-23 seq87352 113 4e-20 seq83756 113 4e-20 seq12510 111 1e-19 seq138762 104 2e-17 seq117604 104 2e-17 seq385372 102 7e-17 seq213696 98.7 9e-16 seq12734 98.7 9e-16 seq12173 93.3 4e-14 seq37865 89.7 4e-13 seq17435 86.0 5e-12 >seq307656 Length=504 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | ||||| | ||| ||||| | |||||||||||||| || || || |||| Sbjct 300 TACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGC 241 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | | |||||| || || || ||||| |||||| | |||||||| ||||| || || | Sbjct 240 TTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTG 181 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 ||||||| || ||||| ||||||| || || | || | ||||||| ||| | Sbjct 180 GTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || | |||||||| || ||||| || || ||||||||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118534 AGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCT 118593 |||||| || || || || || |||||||| ||||| | ||||| |||||| | | Sbjct 504 AGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATT 445 Query 118594 GTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTT 118653 |||| || ||| | |||||||||||||| || || || || || |||||||| || | Sbjct 444 GTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCT 385 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | ||| || | || | |||||| | ||| ||||| | ||| | ||||| || | Sbjct 384 TCGATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCG 325 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||| || ||||| || ||||| Sbjct 324 TCAAAGTCTTGACAAAGATTTGCAT 300 >seq5401 Length=4188 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || ||||| || || | ||||| |||||||||||| Sbjct 4136 GTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTG 4077 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| ||||||| |||||||| || || || ||||||||||| || ||| || Sbjct 4076 CTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTT 4017 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||| ||||| | ||| | || |||||||| Sbjct 4016 AGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 3957 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || |||||||| Sbjct 3956 CAGGGTCTTCACGAAGATCTGCAT 3933 >seq113513 Length=1062 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| ||||| |||||||| || | || | |||||| Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 935 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| ||||||| |||||||| || |||| |||||||||||||| Sbjct 934 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTG 875 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| ||||||| ||||| | || | || || Sbjct 874 GATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 815 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 814 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq87352 Length=1264 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118557 ATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGC 118616 |||||||| | ||| |||||| |||||| ||||| || | ||| | ||||| ||| Sbjct 1262 ATGTTGTAGGCTGTCAGAGTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGC 1203 Query 118617 TGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTG 118676 ||| | || ||||| |||||||||||||| || || || || | |||| |||| Sbjct 1202 TGCGGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTG 1143 Query 118677 TCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 || | | ||||||||||| ||| | || |||||||| || || || ||||| |||||| Sbjct 1142 TCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGC 1083 Query 118737 AT 118738 || Sbjct 1082 AT 1081 >seq83756 Length=1298 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| ||||| || ||||| ||||||| |||||||| || ||||| |||||||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || ||| ||||| | |||| |||||| | | ||| ||||| | ||| | Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || ||||| |||||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq12510 Length=3164 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || ||||||||||| || ||||| |||||| Sbjct 3083 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCC 3024 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| || ||| |||| || || || |||| ||||||||| Sbjct 3023 AGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTGG 2964 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | |||||| || | || | || ||| Sbjct 2963 ATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGGTCTTG 2904 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| Sbjct 2903 CCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq138762 Length=915 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || | |||||| || | ||||| ||||| Sbjct 694 CACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCCTC 635 Query 118589 GAGCTGTTTTCCAG-CGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 |||||| ||||| | || |||||||||||||||| | || || ||||||| |||||| Sbjct 634 GAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTCCT 575 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||||| | || | |||||| ||||||| ||||| | || | || | Sbjct 574 GGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 515 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| ||||| || || || || ||||||||| Sbjct 514 TGCCCGTCAGGGTCTTCACGAAGATCTGCATG 483 >seq117604 Length=1036 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || || ||||| |||||| Sbjct 920 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 979 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| |||| |||||||||||||| ||||| |||||||||||||| Sbjct 980 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 1036 >seq385372 Length=416 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||||| | | ||| | ||| | || ||||| || || | |||||| ||| Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||||||||||| || || ||| ||||||| |||||||| ||||| || Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| || || ||| || || | |||| |||||| ||||||| ||| Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 30 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || ||||| ||||| || Sbjct 29 TCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq213696 Length=664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||||||| ||||| || |||||||||||||| | ||||| ||||| Sbjct 427 CACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTC 368 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGAC---GCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || ||| |||| || | ||||||| || || || ||||| ||||| || Sbjct 367 CAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTATC 308 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || ||||| | || | |||||| | | ||||||||||| ||| | || Sbjct 307 CTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 248 Query 118706 TTTGCCGG 118713 ||||||| Sbjct 247 CTTGCCGG 240 >seq12734 Length=3143 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| || |||| |||||||| || || || || || |||||||| Sbjct 3141 AGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 3082 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| ||||||||||||||| ||| | || ||| Sbjct 3081 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 3022 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 3021 CCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq12173 Length=3197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 301/459 (66%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 44849 TTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTT- 44907 || ||||| ||| | ||||| ||||| ||||| || | ||||| ||||| || Sbjct 1046 TTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTC 1105 Query 44908 TGCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGA 44967 |||| | || || | | || | ||| | |||||||| || || || ||||| Sbjct 1106 TGCGCC-ATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGT 1164 Query 44968 ATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCTCTACTATAATACGAG 45027 | || ||| | ||||| || | ||| | |||| ||||||||| ||| || | Sbjct 1165 GCTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCCTGCCTCCTCTA-----CG-G 1218 Query 45028 AGTCGATCAA----AAGTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGG 45083 || |||| ||| | |||| | || |||| ||| || || |||| ||||| | Sbjct 1219 CCTCC-TCAACAGCAAGCTTGACGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCG 1277 Query 45084 CCATCGAGATGGAATTTTT-TGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCG 45142 |||||||| ||| || | ||| || || || ||| | | || || |||||||| Sbjct 1278 ACATCGAGAGGGAGTTCATCTGC-GACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCC 1336 Query 45143 AATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTAT 45202 | ||| | ||||||||||||| ||||| || || || ||| | | | | Sbjct 1337 GGCCTCATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTCGGCTGC 1396 Query 45203 CCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGC 45262 ||||||||||| | | | ||||| ||||| | ||| | || || || ||||| Sbjct 1397 GCCAAGATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGC 1456 Query 45263 AAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 || || || || |||||||| || |||||||| ||| || Sbjct 1457 AAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTACCAG 1495 >seq37865 Length=1986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | ||| ||||| || || | |||||| ||| | ||||| ||||| Sbjct 120 CACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 61 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| || || ||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 60 GAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 4 >seq17435 Length=2785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||| |||||| |||| || |||||||| || ||||||||||| || |||||| | Sbjct 1828 CTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGTGCGCCCA 1769 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||| |||||||| | || || | ||||| || || || ||||| |||||| Sbjct 1768 TCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTG 1709 Query 118644 TC 118645 || Sbjct 1708 TC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430308101156560