Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq113513 127 2e-24 seq6868 127 2e-24 seq385372 105 8e-18 seq5401 105 8e-18 seq307656 102 9e-17 seq37865 93.3 5e-14 seq83756 91.5 2e-13 seq12734 89.7 6e-13 seq213696 82.4 9e-11 >seq113513 Length=1062 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| ||||||||| || ||||| ||||| || |||| | || || Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 935 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| ||||||||||| | | | || |||||||||| Sbjct 934 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTG 875 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || |||| ||| | | | |||||||| ||||| || | ||||||||| | Sbjct 874 GATCTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 816 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| || ||||| || ||||| ||||| || Sbjct 815 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq6868 Length=3892 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| || |||||| || || ||||| || || || || || |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | | ||||||||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 |||||| |||| ||| | | | |||||||| ||||| || | ||||||||| | Sbjct 3019 GATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 3077 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| || ||||| || ||||| ||||| || Sbjct 3078 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq385372 Length=416 Score = 105 bits (116), Expect = 8e-18 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || | ||||| || || || || | |||| || |||||||| || ||||| Sbjct 174 CTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAA 115 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| ||| | || |||||| ||| ||| ||| |||| ||| Sbjct 114 GATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGT 56 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | | | |||||||| ||||| || | ||||||||| |||||||| || || Sbjct 55 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq5401 Length=4188 Score = 105 bits (116), Expect = 8e-18 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || || || || || | || || |||||||| |||||||| Sbjct 4124 CTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 4065 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | ||| | || |||||| ||| ||| | || | |||| || Sbjct 4064 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC-TGAATCTTAGCCTTGA-CG 4007 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | ||||| || ||||| || | |||||||| ||||| || || ||||| Sbjct 4006 TTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTC 3947 Query 43170 ACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 3946 ACGAAGATCTGCAT 3933 >seq307656 Length=504 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| ||||| || || ||||| || |||| ||||| || ||||||||||| Sbjct 263 CTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAA 204 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| || |||||||| | || | || || |||||| ||| |||||| |||| Sbjct 203 AATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCC-TGAATTTTTGACTTGACAT 145 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| | ||||| |||| || ||||||||||| ||||| ||||| | Sbjct 144 TATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGA 85 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 84 CGAAAATCTGCAT 72 >seq37865 Length=1986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| |||| |||||| || | ||||| || || || || || |||| || |||||| Sbjct 113 TGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 54 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || || ||||| ||||| ||||||||||||| ||| | || |||||||||| Sbjct 53 TTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || ||||| ||||||||||| | || | || ||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| ||| || | | | | ||||| || ||||| || | |||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| |||||||| ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq12734 Length=3143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| |||| ||||||||||| | ||| | | ||||||||| | Sbjct 3141 AGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 3082 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| |||| | | | |||||||| || || |||| |||||||| ||| Sbjct 3081 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 3022 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || ||||| || ||||| ||||| Sbjct 3021 CCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq213696 Length=664 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | |||| |||||| ||||| |||||||| || || || || |||| || Sbjct 427 CACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTC 368 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 |||||||| || ||||| || ||||||||||| | | ||||| Sbjct 367 CAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567055931890400