Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6868 127 1e-24 seq12510 123 2e-23 seq5401 109 4e-19 seq87352 100 2e-16 seq385372 98.7 6e-16 seq37865 98.7 6e-16 seq83756 96.9 2e-15 seq399903 91.5 9e-14 seq138762 91.5 9e-14 seq113513 91.5 9e-14 seq272473 82.4 5e-11 seq99491 82.4 5e-11 seq25253 82.4 5e-11 >seq6868 Length=3892 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||||||| | || || ||||| ||||||||||||| Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| |||| |||| |||||| || ||||| |||||||||||||||| || ||| Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||| | | | | || | ||| | || || Sbjct 3002 ATCCCT-TCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCAC 3060 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||| ||||| || || || ||||| |||||||||||| Sbjct 3061 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 3109 >seq12510 Length=3164 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| | || || ||||| |||||||| || | | Sbjct 3101 CCACCACGCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCC 3042 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||| ||||||| ||| Sbjct 3041 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGG 2982 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 2981 ATGCACTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACT 2922 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| ||||| || |||||||||||||||||| Sbjct 2921 TCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATC 2874 >seq5401 Length=4188 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||| ||||| | Sbjct 4159 CCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCG 4100 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | ||||||||| ||||| ||||| ||||||||||| | |||| Sbjct 4099 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 4040 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||| | | | | || | || | || || || Sbjct 4039 -ATGCCCTCCTTATCCTGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 3981 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| |||||||| || || ||||| |||||||||||| Sbjct 3980 CTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 3932 >seq87352 Length=1264 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 34208 ATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGC 34267 ||||||||| | | ||| ||| | || || | ||||||| | ||||||||||| ||| Sbjct 1262 ATGTTGTAGGCTGTCAGAGTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGC 1203 Query 34268 TGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAA 34327 ||| |||| || | || ||||||||| ||||| ||| | | | | || | Sbjct 1202 TGCGGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTG 1143 Query 34328 TCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGC 34387 || | || ||||| || | || ||||| ||||||||||| || ||||||||||||||| Sbjct 1142 TCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGC 1083 Query 34388 ATC 34390 ||| Sbjct 1082 ATC 1080 >seq385372 Length=416 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||||| || || ||||| | ||||||||||| Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| |||||||||||||||||| || Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || |||||| ||| | | | | || | ||| | || || Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 30 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| ||||||||| ||||| || || || Sbjct 29 TCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq37865 Length=1986 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| | ||||||||||| Sbjct 137 CCGCCGCGCAGGCGGAGCACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCG 78 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| |||||||||||||||||| || Sbjct 77 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 18 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 17 ATGCCCTCCTTGTC 4 >seq83756 Length=1298 Score = 96.9 bits (106), Expect = 2e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | |||||| || || || ||||| ||||||||||| || | || ||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || |||||| ||| | || | | || | || | || || || || | |||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||||||||| || |||||||||||||||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 156 >seq399903 Length=402 Score = 91.5 bits (100), Expect = 9e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||||||| | || || ||||| ||||||||||| | Sbjct 263 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCT 204 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| |||| |||| |||||| || ||||| ||||||||||||||||| Sbjct 203 AGCGTCCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTC 151 >seq138762 Length=915 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| | ||||||||| || || ||| |||| Sbjct 696 AGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCC 637 Query 34238 TCCAACTGCTTGCCTG-CGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGT 34295 || | |||||| || | |||| ||||| ||||||||| | | |||| | || || ||||| Sbjct 636 TCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGG-ATGCCCTGCTTGT 578 Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 | ||||| ||| | | | | || | ||| | || || |||| |||||||| Sbjct 577 CCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGG 518 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || || || ||||| ||||||||||| Sbjct 517 TCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 484 >seq113513 Length=1062 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || || || ||||||||||| | || | | | || Sbjct 996 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCC 937 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||| ||||||||||| | | || ||||||||| Sbjct 936 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCC 877 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | || || |||| ||||||||| Sbjct 876 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 817 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || || ||||| |||||||||||| Sbjct 816 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 784 >seq272473 Length=553 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| |||| ||| |||| Sbjct 295 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCC 236 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 |||| |||||| || ||||| || || ||||||||||| Sbjct 235 TCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTC 198 >seq99491 Length=1162 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||||||| | || || ||||| ||||||||||||| Sbjct 897 CCGCCTCGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 838 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| ||| | || |||| |||||| || ||||| || |||||||||||||| Sbjct 837 AGCGTGCGGCCTTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTC 785 >seq25253 Length=2390 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||||| Sbjct 126 CCTCCGCGCAGACGGAGCACCAGGTGCAGCGTCAACTCCTTCTGGATGTTGTAGTCGGCG 67 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| |||||| || ||||| ||||| ||| ||||||| Sbjct 66 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCCGCTGGTC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 320448956220800