Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq13106 96.9 3e-15 seq25202 87.8 1e-12 >seq13106 Length=3111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| |||| ||| || || || ||||| ||||||||||| || ||||| ||| Sbjct 2396 CAGTTTTATGTTGAGAATGGAGAGTTATCATGTCAGATGTATCAACGCTCAGCTGACATG 2455 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||||| || || || ||||| |||||| |||||| || || || | ||||||||| || Sbjct 2456 GGACTTGGCGTGCCATTCAACATTGCATCTTATGCTCTTCTGACATGTATGATTGCGCAA 2515 Query 20551 GTT 20553 ||| Sbjct 2516 GTT 2518 >seq25202 Length=2393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| ||| || | | || || ||||||||||| || || || || Sbjct 1744 CCAGTTTTATGTTGAGAATGGGGAGCTATTATGCCAGATGTATCAACGCTCTGCAGACAT 1685 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 |||||| |||||||||||||| |||||| ||| | || || |||| ||||||||| || Sbjct 1684 GGGACTTGGTGTTCCTTTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTGCTCA 1625 Query 20550 TGT 20552 || Sbjct 1624 AGT 1622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395942997660100