Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq37927 109 1e-18 seq88849 104 5e-17 seq353702 98.7 2e-15 seq12173 91.5 3e-13 >seq37927 Length=1985 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||| | ||||| |||||| ||||| |||| || ||||| | ||| | Sbjct 1039 AGACTTTGACTACGACTACTTTGGTTTCAAGACGCTCGAGAGGTCTTATCTGTTGAAAGT 1098 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | ||||| || ||||| ||||||||| |||| |||| ||||| || Sbjct 1099 TGGTGGAAAGGTTGTGGAGAGACCACAGCATATGTTGATGAGAGTTTCTGTTGGGATACA 1158 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 |||||||||||| || | || | |||||| | ||| | | |||||| | || Sbjct 1159 CAAGGATGACATTGACTCTGCTGTCAAAACGTACCACATGATGTCTCAGCGCTGGTTTAC 1218 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 1219 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 1251 >seq88849 Length=1251 Score = 104 bits (114), Expect = 5e-17 Identities = 271/403 (67%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| |||||||||||||||||||| || || || | ||||| Sbjct 45 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 104 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||| | | || || | || ||| | ||| | Sbjct 105 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCAGCCGAGCGCCATGAGCAGGCG 164 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||| Sbjct 165 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 224 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 || |||| || || | | ||| |||| ||| | | |||||| | | ||| || || Sbjct 225 TGGCAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCTC-- 281 Query 157497 GAACTCTCTC-CCGCG-GCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGT 157554 |||| | | | | || |||| | | ||| || ||||| ||| | | | || Sbjct 282 GAACACGCGCGACTCGTCCAGCTTGCCCCGGAGGATCTCGTAGAGGAG-GCAGGCGAAGT 340 Query 157555 GGC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGA 157610 || ||| || || ||||| | | |||||| ||| | ||| | | || | ||| Sbjct 341 CGCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGA 400 Query 157611 ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 | ||||||||| |||||| ||||||||||||| || || Sbjct 401 ---GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCC 440 >seq353702 Length=449 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| |||||||||||||||||||| || || || | ||||| Sbjct 405 GTACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 346 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||| | | || || |||| ||| | ||| | Sbjct 345 CCAGTCGAAGGGGTTGGTGGCGTTGTAGAGCCTGCCGCACCCGAGCGCCATGAGCAGGCG 286 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || || | ||||||| Sbjct 285 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGCA 226 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 || |||| || || | | ||| |||| ||| Sbjct 225 CGGCAGCG-CGTCGCAGACGAACTCGCGCTC 196 >seq12173 Length=3197 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | |||||||| ||||||||||| ||||| || || || | ||||| Sbjct 1492 GTAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1433 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| |||| || | || ||| | ||| | Sbjct 1432 CCAGTCGAACGGGTTGGCGGCGTTGTACATCTTGGCGCAGCCGAGCGCCATGAGCAGGCG 1373 Query 157378 GTCCGCCACAAACTTGATGTACT 157400 ||| || || |||| ||||||| Sbjct 1372 GTCTGCGACGAACTCAATGTACT 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1064601340714240