Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq307656 96.9 3e-15 >seq307656 Length=504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || |||| |||||||| || || |||| || || | Sbjct 72 ATGCAGATTTTCGTCAAGACTCTAACTGGCAAAACCATTACACTCGAAGTGGAGGCTTCG 131 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | ||| ||| ||||||| | ||||||||| |||| |||||| Sbjct 132 GACACTATTGATAATGTCAAGTCAAAAATTCAGGACAAAGAAGGCATACCACCAGACCAG 191 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | || | || || |||||||| ||||| ||| | | ||| || | Sbjct 192 CAACGTCTCATTTTCGCTGGTAAACAACTAGAAGACGGTCGCACTCTAAGCGACTATAAT 251 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || |||||| | || ||||| |||||| | ||||| | |||||| Sbjct 252 ATCCAAAAAGAGTCTACCCTTCACTTAGTGCTCAGATTGAGGGGAGGT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414907761065600