Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq88849 136 3e-27 seq307656 114 1e-20 seq12173 109 5e-19 seq6868 91.5 1e-13 seq5401 91.5 1e-13 seq17435 86.0 6e-12 seq12734 82.4 7e-11 >seq88849 Length=1251 Score = 136 bits (150), Expect = 3e-27 Identities = 367/554 (66%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||| ||||| | || || || ||||| | ||| || || ||||| || ||| | Sbjct 872 TACAAGAAGGCCGTGGCCTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCG 813 Query 57642 AGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 || | ||||| || |||| || ||| | | || || |||||| | || Sbjct 812 CGCCACTGGGACACCACCCTCACCGACGGCGAGCGCCACTTCATCTCCCACGTGCTCGCC 753 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT----CGAAAGATTTTCACA 57754 || |||||||| ||||| || || || |||||| | | || || | | Sbjct 752 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCC--- 696 Query 57755 AGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGT 57814 || ||||| ||| | |||||| | ||| ||||| || || | ||||| || ||| | Sbjct 695 -GACGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACAT 637 Query 57815 GCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACG 57874 || || || ||||| ||||| |||||||| || ||| | ||| || |||||| Sbjct 636 CCACTCGGAGATGTACTCGCTGCTCATCGAGACCTACATCCGCGACGCCGCCGAGAAGGA 577 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGAT-CGCCAAGAAGGCAGAGTGGTCAA 57933 | || ||| ||| ||||| || || ||||| | |||| ||||| || ||| | Sbjct 576 CCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGC-AAGGCCGACTGGGCGC 518 Query 57934 TCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993 || ||||| | ||| | | | ||||| ||| | | | |||||||| || Sbjct 517 TCCGCTGGATCGACGGCGGCGAGCGC---TTCGCGGAGCGCATCGTGGCGTTCGCATGCG 461 Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 |||| || || ||||| |||||| ||| |||| || | || ||| | ||||| || || Sbjct 460 TCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCA-TCTTCTGGCTCAAGAAGCGGGGG 402 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112 || ||||||||||| || || ||||||| | || || ||||||||||| ||||| Sbjct 401 CTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAGGGGCTCCACTGC 342 Query 58113 GATTTTGCGTGCCT 58126 || || || ||||| Sbjct 341 GACTTCGCCTGCCT 328 >seq307656 Length=504 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || ||||| || ||| | || || || |||| Sbjct 300 ATGCAAATCTTTGTCAAGACTTTGACGGGTAAAACTATTACCCTTGAGGTAGAGGCGTCT 359 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || |||||||||||| | ||||| |||||| Sbjct 360 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAG 419 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| || || || | || | ||||| || ||| Sbjct 420 CAGCGTCTCATTTTCGCCGGCAAACAATTAGAGGATGGTCGCACCCTCAGCGACTACAAC 479 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || || || ||||| ||||| || Sbjct 480 ATCCAGAAGGAATCAACTCTCCA 502 >seq12173 Length=3197 Score = 109 bits (120), Expect = 5e-19 Identities = 293/442 (66%), Gaps = 7/442 (2%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| ||||| || || || |||||| | | | || Sbjct 773 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCAGG 832 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || || | ||||| | ||| ||||| || || | ||||| Sbjct 833 TTCATGTCCGACGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 892 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || ||||| ||||| || |||| || ||| | ||| || | Sbjct 893 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 952 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGAT-CGCCAAGAAGGCAGA 57925 ||||| | || ||| ||| |||| || | ||||| | |||| ||||| | Sbjct 953 GAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTGCGCCGC-AAGGCCGT 1011 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | || ||||| | ||| | | | ||||||||| | || |||| || Sbjct 1012 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC---TTCGCCGAGCGACTCGTCGCCTT 1068 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGA 58044 ||| |||||| || |||||||| |||||| ||| |||| || | || ||| | |||| Sbjct 1069 CGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTCTGCGCCA-TCTTCTGGCTCAAGA 1127 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | || || || ||||||||||| || || ||||| | | || ||||| |||||||| | Sbjct 1128 AGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTGCTCATCTCGCGTGACGAGGGCC 1187 Query 58105 TCCATACTGATTTTGCGTGCCT 58126 ||| || || || ||||| Sbjct 1188 GCCACTGCGACTTCGCCTGCCT 1209 >seq6868 Length=3892 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || Sbjct 3111 AAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGC 3052 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | ||||| | ||| |||||||||||| | ||||| ||| Sbjct 3051 AGCGACACCATCGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCGCCGGAC 2992 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || || ||| |||| ||| || | ||| || Sbjct 2991 CAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTAC 2932 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 2931 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 2897 >seq5401 Length=4188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 3933 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 3992 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | ||||| |||||| Sbjct 3993 GACACCATCGACAACGTCAAGGCTAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAG 4052 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||||||||| ||| | || || Sbjct 4053 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGA 4087 >seq17435 Length=2785 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || |||||||| | ||||| || ||||| || |||||||| Sbjct 1706 GGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGCTAATTTTTGCTGGAAAGCAGTTGGA 1765 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| ||||| || ||||| || ||||| ||| |||| || Sbjct 1766 AGATGGGCGCACATTGGCTGATTACAACATCCAGAAAGAGTCCACTCTCCATTTGGTGCT 1825 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 1826 GAGGCTCAGGGGTGG 1840 >seq12734 Length=3143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || | Sbjct 2993 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAGCAGC 3052 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | ||||| ||||| Sbjct 3053 GACACCATCGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGAATCCCGCCGGACCA 3111 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGG 31343 |||||| || | ||||| || || ||| ||| Sbjct 3112 GCAGCGGCTCAACTTCGCCGGGAAGCAGCTGG 3143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442054391745600