Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq343112 104 3e-17 seq30271 98.7 1e-15 >seq343112 Length=461 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || ||| |||||| | || || |||||||| | | | || | || || || || Sbjct 371 TAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCCGCATAGTAGATATTT 312 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 65549 || || || | ||| || || | || |||||| |||| || |||||||| | | | Sbjct 311 TCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAATGGATATCTCATTAAT 252 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 ||||| || || || | |||||| |||||||||||||| || | ||| | | | || || Sbjct 251 ATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGATGACGCATGTTCGAA 192 Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666 |||| || || || ||||||| ||| || || ||||| || ||||||||| || Sbjct 191 TTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTGTTGAGATTTTTG 135 >seq30271 Length=2204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||||| || | ||| |||| ||| |||| | ||||| |||| ||| || Sbjct 12 TCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATAGGAACAATCCC 71 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| || || || || ||||| || ||| | |||||||| || | ||| Sbjct 72 ATTGGATGTCCCGTTAGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGTACTGA 131 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 132 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTGAGAGTATCATAGAT 191 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || ||||| || ||||| | || |||||||| Sbjct 192 TCCCTCGATGCTATCGTCTTTCATGCAGATGAGGAAACAGCT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652692030551200