Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq343112 123 4e-23 seq30271 104 3e-17 seq353702 84.2 3e-11 >seq343112 Length=461 Score = 123 bits (136), Expect = 4e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 ||| | |||| | ||| ||| |||||||| ||| | |||||||| | | | || Sbjct 386 CCTTTATATGATGAATAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCC 327 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 | || || || |||| ||||| | ||| ||||| | || |||||| |||| || ||| Sbjct 326 GCATAGTAGATATTTTCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAAT 267 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 ||||| | | | ||||| || || || | |||||| |||||||||||||| || | | Sbjct 266 GGATATCTCATTAATATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGA 207 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 || | | | || ||| |||| || || || ||||||| ||| || || ||||| || Sbjct 206 TGACGCATGTTCGAATTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTG 147 Query 79534 TTGAGATT 79541 |||||||| Sbjct 146 TTGAGATT 139 >seq30271 Length=2204 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| |||| ||| |||| | ||||| |||| ||| || Sbjct 12 TCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATAGGAACAATCCC 71 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| || || || || ||||| || ||| | |||||||| || | ||| Sbjct 72 ATTGGATGTCCCGTTAGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGTACTGA 131 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 132 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTGAGAGTATCATAGAT 191 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| |||||||| || ||||| | || |||||||| Sbjct 192 TCCCTCGATGCTATCGTCTTTCATGCAGATGAGGAAACAGCT 233 >seq353702 Length=449 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| || ||||| | || || |||||||| || ||||| Sbjct 119 CACGCGAAGTCGCAGTGCAGCCCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGG 60 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| || || ||||| || ||||| || |||| |||| || || || || ||||| Sbjct 59 CCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712287596135200