Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq343112 122 1e-22 seq30271 98.7 1e-15 seq37927 86.0 8e-12 >seq343112 Length=461 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 || ||| ||| |||| ||| || |||||||| | | | || |||| || || || Sbjct 371 TAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCCGCATAGTAGATATTT 312 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || ||||| | ||| ||||| | || |||||| ||||| || |||||||| | | | Sbjct 311 TCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAATGGATATCTCATTAAT 252 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 ||||| || || || | |||||| || ||||||||||| || | || | | | || ||| Sbjct 251 ATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGATGACGCATGTTCGAA 192 Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 |||| || || || ||||||| ||| || || ||||| || ||||||||| || Sbjct 191 TTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTGTTGAGATTTTTG 135 >seq30271 Length=2204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||||| || | ||| |||| ||| |||| | ||||| |||| ||| || Sbjct 12 TCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATAGGAACAATCCC 71 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| || || || || ||||| || ||| | |||||||| ||| | ||| Sbjct 72 ATTGGATGTCCCGTTAGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGTACTGA 131 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 132 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTGAGAGTATCATAGAT 191 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || ||||| || ||||| | || |||||||| Sbjct 192 TCCCTCGATGCTATCGTCTTTCATGCAGATGAGGAAACAGCT 233 >seq37927 Length=1985 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | | Sbjct 1252 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 1193 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 |||||| | | ||| || || || || | ||| ||||| || || | || | ||| | Sbjct 1192 GTACGTTTTGACAGCAGAGTCAATGTCATCCTTG-TGTATCCCAACAGAAACTCTCATCA 1134 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||||||| ||||| || || | ||| | | |||||||| || || | || | Sbjct 1133 ACATATGCTGTGGTCTCTCCACAACCTTTCCACCAACTTTCAACAGATAAGACCTCTCGA 1074 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || || |||||||| |||| ||| |||||||| || ||||| || Sbjct 1073 GCGTCTTGAAACCAAAGTAGTCGTAGTCAAAGTCTCTATCATAAATTAT 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665550456096800