Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq307656 123 3e-23 >seq307656 Length=504 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| ||||| |||||||| || || || ||||| | |||| |||||| Sbjct 280 ACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCT 221 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||||||||| | || ||||||||||| || || ||||||||||||||||| | Sbjct 220 AGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTGA 161 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| || | | || | ||||||| | || ||||| | || | || ||| Sbjct 160 ATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTG 101 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || | || || ||||| || |||||| || Sbjct 100 CCAGTTAGAGTCTTGACGAAAATCTGCATACCT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502792364337600