Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq88849 181 2e-40 seq12173 147 3e-30 seq353702 91.5 2e-13 >seq88849 Length=1251 Score = 181 bits (200), Expect = 2e-40 Identities = 399/586 (68%), Gaps = 13/586 (2%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| | | | | || ||||| | ||||| ||||| |||||||| Sbjct 910 CCATGTTCCCCATCCGCTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCCTCCT 851 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||||| ||| ||||| || || ||| |||| | | | ||||| || | | Sbjct 850 TCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCGCGCCACTGGGACACCACCCTCA 791 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | || || || ||| | | |||||||| |||| |||||| || | Sbjct 790 CCGACGGCGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCA 731 Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231 |||| ||| || || | | || ||| | || || || | | |||| | || Sbjct 730 TCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCC-GACGTGCAGGTGGCCGAGGCG-CG 673 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || ||||| ||||| ||| || |||||| | |||||||| |||||||| || Sbjct 672 CGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCT 613 Query 125291 GATTGACATGTACATTCGCGAT-CCGCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 || || | ||||| ||||| |||| | || || ||||| ||| ||||||| Sbjct 612 CATCGAGACCTACATCCGCGACGCCGCCGAG-AAGGACCGCCTCTTCCGCGCCATCGACA 554 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| | |||| | | || |||||||| | || | || Sbjct 553 CCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCTCCGCTGGATCGACGGCGGCGAGC 494 Query 125410 -CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 ||||| | || | | ||||| ||||| ||| |||||||||||||| ||||| Sbjct 493 GCTTCG----CGGAGCGCATCGTGGCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGC 438 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | || |||| ||||||| |||||||||||||| || ||||||||||| || || | Sbjct 437 TCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTC 379 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 378 CAACGAGCTCATCTCACGCGACGAGGGGCTCCACTGCGACTTCGCC 333 >seq12173 Length=3197 Score = 147 bits (162), Expect = 3e-30 Identities = 396/589 (67%), Gaps = 19/589 (3%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || ||| |||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 627 CCATGTTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 686 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||||| || ||||| || || ||| ||| | | | ||||| | | || | Sbjct 687 TCTGGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACGGCACGCTCT 746 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 747 CCCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 805 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTG 125228 |||||| ||| || || | | ||| | || || ||| || | |||| Sbjct 806 ATCGTCCTCGAGAACCTCGCCTCCAGGTTCATGTCCGACGT---CCAGGTCGCCGAGGCC 862 Query 125229 TCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 863 -CGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCT 921 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || ||||| ||| ||| Sbjct 922 GCTGCTCGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCG 980 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 |||| || || | | || ||||| |||| || || |||||||| | || | Sbjct 981 ACACCGTCCCCGCCGTGCGCCGCAAGGCCGTCTGGGCCATGCGCTGGATCGACGGCGGCG 1040 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| |||| || || ||||| ||| |||||||| ||||| ||| Sbjct 1041 AGCGCTTCG----CCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCG 1096 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || |||| ||||||| |||||||||||||| || ||||||||||| || || Sbjct 1097 GGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTT 1155 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||| | | || || || |||||||||| ||||| ||||| ||| Sbjct 1156 CTCCAACGTGCTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCC 1204 >seq353702 Length=449 Score = 91.5 bits (100), Expect = 2e-13 Identities = 272/416 (65%), Gaps = 13/416 (3%) Strand=Plus/Plus Query 125457 TTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGG 125515 ||||| ||||| | || |||| ||||||| |||||||||||||| || ||||||||||| Sbjct 1 TTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGG 59 Query 125516 ACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCAT 125575 || || | |||||| | || || || ||||| || || ||||| ||||| || Sbjct 60 CCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCACTGCGACTTCGCGTG 119 Query 125576 TCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCA 125634 || || | || | || | | | | | || ||| ||| || || Sbjct 120 CCTCCTCTA-CGAGATCCTCCGGGGCAAGCTGGACGAGTCCCGCG---------TCTTCG 169 Query 125635 ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCA 125694 | || || | || || || || || | ||||| | ||| | || ||| | Sbjct 170 AGATCGTCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCGTGCG 229 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTC 125754 | ||||||||||| || | || ||| || ||||||| ||||| || || || || | Sbjct 230 CGCTCGTTGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCC 289 Query 125755 TACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGA 125814 | || | | | || ||| | | |||||||||| || ||||| || | ||| Sbjct 290 TGCTCATGGCGCTCGGGTGCGGCAGGCTCTACAACGCCACCAACCCCTTCGACTGGATGG 349 Query 125815 CCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||| ||||||||||||||||||||| ||| |||||||| Sbjct 350 AGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTAC 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734888214776800