Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq307656 149 1e-30 seq5401 93.3 1e-13 seq17435 87.8 4e-12 >seq307656 Length=504 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || |||| || | ||||| ||||| || ||||||||||| |||||| | |||| Sbjct 286 CTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCG 227 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 |||||||||||||| ||||| ||||| || | || || || || ||||| |||||||| Sbjct 226 TCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTG 167 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 |||||||| |||| || ||||| || | || || || || || || |||||||| Sbjct 166 TCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATG 107 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || || |||||||| Sbjct 106 GTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq5401 Length=4188 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | || || | || || || || || || ||| Sbjct 4129 GTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 4070 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || |||||||||||||| || || Sbjct 4069 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTG 4010 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | ||| || ||||| | || || ||||| || || || || Sbjct 4009 ACGTTGTCGATGGTGTC-CGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGT 3951 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3950 CTTCACGAAGATCTGCAT 3933 >seq17435 Length=2785 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || |||||||| || || || |||| Sbjct 1842 TTCCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAG 1783 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || | || ||||| | || |||||||||||||||||||| || || || || | Sbjct 1782 CCAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGG 1723 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || ||||| || ||||||| Sbjct 1722 GGATGCCTTCCTTGTCCTGAA 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1141570718115440