Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq21586 118 9e-22 seq70840 114 1e-20 >seq21586 Length=2558 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 1059 ACGCCGGTGGAGCCGAACCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCC 1118 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || || || || | || | |||||||||||| || ||||| || | ||| Sbjct 1119 GCGACCTCCGGCGTGGCGATGACCTGGATGATCAGCTGCGCGATGCGGTCCCCAGGCTTG 1178 Query 5621 ACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 || | || || | | | |||||| ||||| |||||||| |||||||||||| Sbjct 1179 ACGGCAAAGTCCACCTCGGAGTGGTTGAAGAGCACGACGCCCACCGGGCCGCGGTAGTCC 1238 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 ||||| ||||| || |||||||||||||| ||||||| | |||||| ||||| Sbjct 1239 GCGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAGCGCCAGACCGGA 1291 >seq70840 Length=1432 Score = 114 bits (126), Expect = 1e-20 Identities = 174/245 (71%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| |||||||| || ||||| | ||||| | || |||| ||| |||||||| Sbjct 800 ACGCCGGTGGACCCAAAGCCGCCCTCCCCTCTGACAGTGGCGTCGAGGTCGGCCACCTCG 859 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 |||| || || ||| ||| |||||| || || ||| || | ||||| || | | Sbjct 860 GCCACCTCCGG---CGCGGCGACACGCTCGACGACCATCTGGGCCACGCGGTCCCCTGGC 916 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 | || |||| | || | | |||||| |||| || |||||| ||| |||||| Sbjct 917 TGCACGGCGAAGCCCGCGTCGGAGTGGTTGAAGAGCAGCATCCCCACGGGGCCCCGGTAG 976 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| | ||||| | |||||||||||||| |||||| ||||||||| || || Sbjct 977 TCGGCGTCCACCACGCGC-CGCCCACGTCGATGCCGTGCTTCCACGCCAGGCCCGACCGC 1035 Query 5738 GGAGC 5742 || || Sbjct 1036 GGCGC 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426562758760160