Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6868 98.7 8e-16 seq307656 91.5 1e-13 seq12510 89.7 4e-13 >seq6868 Length=3892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 2917 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 2976 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | |||||||||| ||||| ||||| | Sbjct 2977 GATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTT 3036 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| ||| | |||| ||| | || ||||| || || || || || ||| Sbjct 3037 GTCG--ATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 3094 Query 48713 ACAAAAATCTGCATCGTGTCTTGATCG 48739 || || ||||||||| | ||| ||||| Sbjct 3095 ACGAAGATCTGCATCTTCTCTAGATCG 3121 >seq307656 Length=504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| || | |||||| ||||| || ||| ||||| || || || || || Sbjct 299 ACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTC-GC 241 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || |||| || || || ||||| || |||| | ||| ||||| || | Sbjct 240 TTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTG 181 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| |||||| |||||| ||||| | | || || || | || |||| Sbjct 180 GTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||| |||||||| || || ||||| || || ||||||||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq12510 Length=3164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| |||| || | |||||||||||| Sbjct 3077 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCCAGCTGC 3018 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||| |||| ||| || | | ||||||||| || ||| Sbjct 3017 TTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTGGATCTTC 2958 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||||||| | ||||| || | ||| ||||| || || ||| Sbjct 2957 GCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGGTCTTGCCTGTG 2898 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| ||||||||| Sbjct 2897 AGGGTCTTCACAAAGATCTGCATC 2874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417831032546180