Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq168399 100 1e-16 seq384637 91.5 8e-14 seq154314 91.5 8e-14 seq15458 86.0 3e-12 >seq168399 Length=793 Score = 100 bits (110), Expect = 1e-16 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||| || |||||||| | | |||||||| |||||||||||||||| Sbjct 163 AATTAAGCAAAAA---AAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 219 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||| |||||||||| |||||| Sbjct 220 GCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 254 >seq384637 Length=417 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| |||| ||||||||||||||||||||||| |||| Sbjct 123 ATTGGCCCATACAGGTCTCGAACCTGTGACCGTCGCGTTATTAGCACGACGCTCTAACCA 64 Query 11514 ACTGAGCTAATGGGCCGTC 11532 |||||||||| |||| || Sbjct 63 GCTGAGCTAATAGGCCATC 45 >seq154314 Length=846 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 791 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 732 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 731 TGAGCTAATAGGCC 718 >seq15458 Length=2922 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||||| ||||||||||||||||||| |||| | Sbjct 935 TGGCCCATGCAGGTGTCGAACCTGCGACCTTCATGTTATTAGCACGACGCTCTAACCAGC 994 Query 11516 TGAGCTAATGGGCC 11529 |||| |||| |||| Sbjct 995 TGAGATAATAGGCC 1008 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259368134969680