Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq307656 113 4e-20 seq6868 109 5e-19 seq12510 98.7 9e-16 seq83756 95.1 1e-14 seq113513 91.5 1e-13 seq87352 89.7 5e-13 >seq307656 Length=504 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| ||||||| | ||| ||||| | ||||| || ||||| | |||| Sbjct 306 TTTGCATACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTAT 247 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | |||| || || || ||||| || | || || | | |||||| | Sbjct 246 AGTCGCTTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGT 187 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | |||||||| |||||| | | |||||| | Sbjct 186 CTGGTGGTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAG 127 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || |||||||| ||||| ||||| || || || |||||||| Sbjct 126 CCTCCACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq6868 Length=3892 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || ||||| || | ||| || ||| | ||| | ||||| Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || ||||| ||||| ||||| | Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||||||| | ||| ||||| | || || || | ||||||||| || Sbjct 3019 GATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 3078 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 3079 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq12510 Length=3164 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| ||||| || ||| | ||||||| Sbjct 3083 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCC 3024 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| | || |||| || || || || | || ||||| | Sbjct 3023 AGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTGG 2964 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | ||| || |||| | ||||| |||| |||||||| || Sbjct 2963 ATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGGTCTTG 2904 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||||||||| Sbjct 2903 CCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq83756 Length=1298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | | ||||| || ||||| || || || ||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||| || | ||| ||||||| | || || |||| |||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq113513 Length=1062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || |||||||| | ||| || || | || || |||||| Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTC 935 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||||| || |||| || || || ||||| | Sbjct 934 GAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTG 875 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | ||| ||||| | || || || | ||||||||| || Sbjct 874 GATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 815 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 814 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq87352 Length=1264 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| | |||||| ||||| || || | || || | | ||| | ||||||| Sbjct 1249 TCAGAGTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGCTGCGGGTCTGGAG 1190 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || ||||||||| | ||| ||||||| | |||| Sbjct 1189 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGA 1130 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||| || || || || || ||||||||||||||||| Sbjct 1129 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444558167104800