Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq277028 147 3e-31 seq75652 129 9e-26 seq360843 96.9 5e-16 seq339908 96.9 5e-16 seq27307 96.9 5e-16 seq360568 95.1 2e-15 seq61004 89.7 8e-14 >seq277028 Length=547 Score = 147 bits (162), Expect = 3e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || || ||||||||||||||||||||| |||| ||||||||||| Sbjct 369 CGTGATAACATCCAGGGTATTACCAAGCCAGCTATCCGTCGTTTGGCGCGTCGTGGTGGT 428 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | || || | |||| ||||||| ||||| ||| | ||| | ||||| Sbjct 429 GTCAAGCGTATTTCAGGTCTCATCTACGAAGAGACTCGTGGTGTCCTCAAGGTATTCCTT 488 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| ||| |||| ||| || || ||| ||||| ||||| || | ||||| ||||| Sbjct 489 GAGAACGTCATCCGTGACGCCGTCACCTACACCGAACACGCAAAGAGGAAGACAGTCAC 547 >seq75652 Length=1380 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 1347 CTGCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGGCCCGCCGCGGC 1288 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 1287 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 1228 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 1227 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 1168 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || || || Sbjct 1167 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACG 1127 >seq360843 Length=441 Score = 96.9 bits (106), Expect = 5e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || || || || || |||||||| || ||||||||||| || || Sbjct 265 CGCCAAGCGCCACCGGAGGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 324 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 325 CCGGCGCCTTGCTCGCCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 384 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 385 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCC 422 >seq339908 Length=464 Score = 96.9 bits (106), Expect = 5e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || || || || || |||||||| || ||||||||||| || || Sbjct 288 CGCCAAGCGCCACCGGAGGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 347 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 348 CCGGCGCCTTGCTCGCCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 407 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 408 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCC 445 >seq27307 Length=2311 Score = 96.9 bits (106), Expect = 5e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || || || || || |||||||| || ||||||||||| || || Sbjct 2135 CGCCAAGCGCCACCGGAGGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2194 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 2195 CCGGCGCCTTGCTCGCCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 2254 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 2255 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCC 2292 >seq360568 Length=441 Score = 95.1 bits (104), Expect = 2e-15 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 |||| || | || || || ||||| |||| || | |||| | |||| || | || Sbjct 322 TGGCGCGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGTGGAGACACGCGGTG 263 Query 16560 TTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTA 16619 | | |||||||||||||||| |||||||| || || || ||| ||||||||||| Sbjct 262 TGCTCAAGATCTTCCTCAAGAACGTTATCCGCGACGCCGTCACCTACACCGAGCACGCGC 203 Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||| |||||| ||||||| ||||||| || | || || || ||||| Sbjct 202 GTCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 148 >seq61004 Length=1556 Score = 89.7 bits (98), Expect = 8e-14 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 1423 CGCCAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 1481 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 1482 TCCGGCGTCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1541 Query 16551 TTCGTG 16556 |||| Sbjct 1542 CCCGTG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78466106962740