Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq351396 230 3e-55 seq162061 201 1e-46 seq664408 179 5e-40 seq597246 179 5e-40 seq41969 150 2e-31 seq217498 125 9e-24 seq466979 113 6e-20 seq472319 105 8e-18 seq178439 105 8e-18 seq71309 96.9 4e-15 seq63256 95.1 2e-14 seq623740 91.5 2e-13 >seq351396 Length=451 Score = 230 bits (254), Expect = 3e-55 Identities = 229/297 (77%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 |||||||| || |||||||| ||||||||||| || ||||| |||||||||||||| || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || | |||||||||||||| ||||||||||||||||| ||||||| ||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 |||||||||||||| || || |||||||| |||| | || | ||| ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||||| ||||| ||||| |||||||| || | || | | ||||||| || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || || ||| ||| |||||||| || |||||||| ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGT 122 >seq162061 Length=815 Score = 201 bits (222), Expect = 1e-46 Identities = 249/338 (74%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 138168 CTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCT 138226 ||||||||||| ||| || || || |||||| | ||||| ||||| | |||| ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 138227 GGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTC 138284 | | || | || || || || |||||| ||||||||||||| ||||| || || || Sbjct 276 GTT---CAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTT 332 Query 138285 AGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGT 138344 || ||||| || ||||| |||| ||||| ||||||||||||| || ||||| Sbjct 333 TCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGC 392 Query 138345 GTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAAC 138404 || |||||||| || |||||| | | ||| | || || || ||||| ||||| | ||| Sbjct 393 GTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 452 Query 138405 CCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCAT 138464 || |||||||||||||| || || || | | || | |||||||| || ||||||||| Sbjct 453 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 512 Query 138465 GGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 || || || |||||||| ||| | | ||| || || || Sbjct 513 GGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 179 bits (198), Expect = 5e-40 Identities = 159/199 (80%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 135750 GGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACC 135809 ||||| ||| || |||||||| |||||||| |||||||||||||||||| || | |||| Sbjct 200 GGATTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACC 141 Query 135810 CCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACT 135869 | |||| ||||| ||| |||||||||||| | || || ||||| | ||| |||| Sbjct 140 CTATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACT 81 Query 135870 ACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAG 135929 ||| |||| ||||||||||| |||||||| || |||||||| ||||||||||| || | Sbjct 80 TTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTG 21 Query 135930 TTGCTGGGGTCTTCGGTGG 135948 | ||||| || ||||| || Sbjct 20 TAGCTGGTGTATTCGGCGG 2 >seq597246 Length=243 Score = 179 bits (198), Expect = 5e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 135530 GGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCC 135589 |||||| || | || ||||| || || |||||||||||| |||| ||| || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 135590 ATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAAT 135649 ||||| | ||||| || || || ||||||||||| ||| ||||||||||| |||| ||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 135650 GGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGT 135709 |||||||||||| | ||| | || | |||||| | | ||||| | ||| |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769 || ||||||||||| || ||| |||||||||| ||||||||| ||| || |||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 135770 GC 135771 || Sbjct 3 GC 2 >seq41969 Length=1890 Score = 150 bits (166), Expect = 2e-31 Identities = 165/218 (76%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 138660 TGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTA 138719 |||| ||| |||||| | | || || ||||| ||| |||| || |||||||| || Sbjct 576 TGGATGAGTGCTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTT 517 Query 138720 TCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATT 138779 || || ||| | |||||||| ||||||| |||||| ||||| ||||||||||| || ||| Sbjct 516 TCCCAGGAA-TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATT 458 Query 138780 CTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTT 138839 ||| | || || ||| | ||||| |||||||| || |||||| ||||| ||||| || Sbjct 457 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 398 Query 138840 GTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | || ||||| || || | ||| | || |||||||| Sbjct 397 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 360 >seq217498 Length=656 Score = 125 bits (138), Expect = 9e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || ||||| || ||||| || || | || ||||| || || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| |||||| | | | || || |||| |||||| | || ||||||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || || |||||| |||||||| || | || ||||| || Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCT 135580 || ||||||||||| |||| ||| || Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACT 527 >seq466979 Length=342 Score = 113 bits (124), Expect = 6e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 138522 GCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGG 138581 || ||| | || ||||||| |||||||| ||||||||||| ||||||||| | | ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 138582 TCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTT 138641 || ||||||||||| |||||||| ||||| |||||| | || ||||||||||| ||| Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq472319 Length=337 Score = 105 bits (116), Expect = 8e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 136036 CAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCG 136095 ||| || |||||||| ||||||| ||| || ||||| |||||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 136096 TCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTT 136146 | |||||||||||||| ||||||||||||||||| ||||||| || Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq178439 Length=759 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138691 CTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTG 138750 || ||||| |||| | ||||| || || || | ||||| |||||| | ||||||| || Sbjct 596 CTATTAACTTACGGTCCTATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTG 655 Query 138751 AATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGG 138810 |||| ||||| ||||||||||| || |||||| | ||||| ||| | |||| ||||||| Sbjct 656 AATTTGAGACTTTCTACACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGG 715 Query 138811 CTCCTGTGGATCA 138823 | || |||||| Sbjct 716 CAGCTTAGGATCA 728 >seq71309 Length=1427 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| || |||||||| ||||||||||| || ||||| || |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 || | |||||||||||||| | ||||||||||| ||||| | ||||||||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 136153 TGC 136155 ||| Sbjct 798 TGC 800 >seq63256 Length=1526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 138093 CTACTTTGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTC 138152 ||||| ||||| || || | ||||||||| | ||||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 138153 TGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTT 138212 ||||| ||||| || ||||||||||| ||| || || || |||||| | ||||| ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 138213 GAGATCTCTC-GTCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCC 138269 || | ||| ||||| | || | || || || || |||||| ||||||||| ||| Sbjct 141 GAACTTGCTCGGTCTGTT---CAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 138270 ATCGCTGTGTTCGT 138283 ||||| || || || Sbjct 198 ATCGCGGTTTTTGT 211 >seq623740 Length=225 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 138243 TACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTC--GTCAGCGTGTTCCTGATGT 138300 || || || ||| |||||||| ||| ||||| || || || || ||||| || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 138301 ATCCTTTGGGT-----CAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 |||| |||| | || | ||||||||||||| || ||||| || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 138356 CTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATAT 138415 || |||||| | | ||| | || || || ||||| ||||| | ||||| |||||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 138416 GATGGGCGT 138424 |||||| || Sbjct 10 GATGGGAGT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622738753472000