Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq351396 221 3e-53 seq664408 159 1e-34 seq597246 113 1e-20 seq217498 113 1e-20 seq472319 100 8e-17 seq71309 89.7 1e-13 >seq351396 Length=451 Score = 221 bits (244), Expect = 3e-53 Identities = 266/359 (74%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 19916 GGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC 19975 |||||| ||||| ||| ||| || | || || || || || ||||| |||||||| Sbjct 449 GGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGAC 390 Query 19976 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTT 20035 ||||||||||| ||||| || || || ||||| |||| || || ||||||||| ||| Sbjct 389 TTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 330 Query 20036 CAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCT 20095 ||| || |||||||||||||| ||||| | ||| ||| || || || || || ||| | Sbjct 329 CAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTT 270 Query 20096 TACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTC 20155 || | | || || | ||||||||||||||||| |||||||| || || ||||| || Sbjct 269 CACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 210 Query 20156 AGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTA 20214 ||||||||| ||||| || | || || ||||||||| | | || |||||| Sbjct 209 TGTAGTTGATAGTCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTA 151 Query 20215 ACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 | || || | ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 150 ATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 >seq664408 Length=200 Score = 159 bits (176), Expect = 1e-34 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGG 19732 || ||||| |||| || | | || ||| |||||| ||||| | ||||||| |||| Sbjct 192 GTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGG 134 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 ||||| || || ||||||||||||| | || || ||||||| ||| ||||||||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||||||| ||||| ||||| |||||||||||||| ||||||||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 19853 CGTATTCGGTGG 19864 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 113 bits (124), Expect = 1e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 19446 GGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCA 19505 || || ||| | || |||||||||||||| ||||| || | |||| | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 19506 ATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAAC 19565 || ||| |||||||||| || || |||||||| | || | ||||||||||||||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 19566 GGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGT 19625 || ||||| ||| | || |||| | ||||||||| | || ||||| || ||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 19626 AGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACA 19685 | |||||||||| || | | || || ||| | || ||||| || ||||| || Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 19686 GC 19687 || Sbjct 3 GC 2 >seq217498 Length=656 Score = 113 bits (124), Expect = 1e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 330 TGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 389 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| | | || ||| || ||||| ||||||| ||||| || || || |||||| Sbjct 390 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 449 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||| | ||| Sbjct 450 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCT 509 Query 19479 GGAGC 19483 || || Sbjct 510 GGTGC 514 >seq472319 Length=337 Score = 100 bits (110), Expect = 8e-17 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 || || || ||||| ||||||| ||||||||||| ||||| || || || ||||| | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062 || || || ||||||||| |||||| || |||||||||||||| ||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 89.7 bits (98), Expect = 1e-13 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970 ||||||||||||| ||| ||| ||| || | | || || || || ||||| ||| Sbjct 643 ATCAAGGAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTCAAGAGGAA 699 Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 ||||| ||||||||||| || || || || ||| |||| || || |||||||| Sbjct 700 GAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCCAATATGCA 759 Query 20031 TCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | |||||| || || |||||||| || || ||||||| Sbjct 760 TGTTTCAACAACTCACGTTCTTTCCACTT-TTTCTTG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143298938752080