Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq351396 228 1e-54 seq664408 149 1e-30 seq597246 143 4e-29 seq171123 102 1e-16 >seq351396 Length=451 Score = 228 bits (252), Expect = 1e-54 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 |||||||| || || ||||| |||||||| ||||| || || ||||| ||||| || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || || | |||||||| ||||| ||||||||| | ||||||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | | | ||||| || || | ||||| | || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||||||||||| ||||| ||||||||||| || |||||| |||| ||| || | Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | | ||| |||| || |||||||||||||| ||||||||| | ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || ||||||||||| || ||| |||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 211953 TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGG 212012 |||||| || ||||| ||||| | || ||| ||||| ||| | ||||||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 212013 TCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTT 212072 ||| || ||||| || |||||||||||||| ||||| || | |||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 212073 CGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGG 212132 |||||||| ||||| || |||||||||||||| |||||||| ||| |||||| || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 212133 TATGTTCGGTGG 212144 | | ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 211726 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 211785 ||||| || | ||||| ||||| || ||||||||||| || |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 ||||| || ||||| || || || |||||||| ||| || ||||||||||| | |||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 211846 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGA 211905 ||||||||||| || | | | | |||||| | | || | | || ||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 211906 AGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCA 211965 | ||||||||||| | |||||| ||||||||||||||||| |||||| || ||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 211966 GC 211967 || Sbjct 3 GC 2 >seq171123 Length=784 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 212406 CAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TCAGGTAAG-GTTGTT 212463 |||||||||||| ||| | || |||||||| || |||||| || ||| | | ||| || Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 212464 CCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGA 212523 |||||| | |||| | | ||| | || || ||||||||||||| |||||| || || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 212524 AATGCACACAACTTCCCACTTGA 212546 ||||| ||||||||||| || || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 800830485960800