Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq351396 228 9e-55 seq664408 131 2e-25 seq597246 131 2e-25 seq472319 104 3e-17 seq217498 104 3e-17 seq162061 91.5 2e-13 seq63256 91.5 2e-13 seq71309 84.2 2e-11 >seq351396 Length=451 Score = 228 bits (252), Expect = 9e-55 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 171382 || || || || || ||||| ||||| || ||||| ||||| ||||||||||| || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 171383 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 171442 || ||||||||||||| ||||| ||||||||||||||||| |||||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 171443 GCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 171502 |||| | |||||||| | | ||||| || || | ||||| |||| ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 171503 AACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCA 171562 ||||| || || ||||| ||||||||||| || || ||| | || || | Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| | | ||| |||| || ||||| |||||||| ||||| ||| | ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648 || ||||||||||| ||||||||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171049 TGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGG 171108 ||| ||||||||||| ||||| | || || ||| || ||| | | || || | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 171109 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTT 171168 ||| || ||||||||||||||||| |||| || || |||| |||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 171169 CGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGG 171228 || ||||| ||||| |||||||| || ||||| || ||||| ||| ||||||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 171229 TATGTTCGGTGG 171240 | | ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 170822 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 170881 |||||||| | ||||| ||||| || |||||||||||| | |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 170882 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAAC 170941 || ||||| ||||| || || || |||||||| || || | || |||||||| ||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 170942 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 171001 || |||||||| || || || || | |||||| | |||| | || || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 171002 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 171061 | |||||||||| | | | | || ||| | |||||||| ||| ||||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 171062 GC 171063 || Sbjct 3 GC 2 >seq472319 Length=337 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 171329 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 171388 || || || ||||| ||||| | ||||| ||||| ||||||||||| || || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 171389 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 171438 ||||||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq217498 Length=656 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| |||||| || || | ||| | || ||||| ||||| || |||||||| Sbjct 330 TGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 389 Query 170735 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 170794 | | | || || || || || ||| | || ||||||||||| |||||||| ||| Sbjct 390 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 449 Query 170795 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCT 170854 || || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 450 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCT 509 Query 170855 GGTGCTGTAGTTCCATCTTC 170874 |||||| | |||| |||| Sbjct 510 GGTGCTATTATTCCTACTTC 529 >seq162061 Length=815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 211/318 (66%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 172110 TTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACGT 172169 |||| ||| |||||||||||| | | || ||||| |||| | |||| | || Sbjct 228 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG 287 Query 172170 CCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTAATA 172229 ||||| || ||| | ||||||| | || || || || | || || || Sbjct 288 CCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCTGTATTCCTTATT 347 Query 172230 TATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTT 172289 |||||| | || || | |||||||||| || || ||||| || |||||||| ||| Sbjct 348 TATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTT 407 Query 172290 CGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATG 172349 || | || | ||| | || || || || ||| || | || ||||||||||||||| Sbjct 408 CGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 467 Query 172350 GGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAG 172409 || || || || || | || | || | ||||| || || ||||| || || ||| | Sbjct 468 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCGACCGTAGAA 527 Query 172410 AACACATTGTATGAAGAC 172427 ||||| | | ||| ||| Sbjct 528 AACACTCTATTTGAGGAC 545 >seq63256 Length=1526 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 172020 TTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGA 172079 ||| | |||||||| || || |||||||||||| || || |||| ||| ||||| || Sbjct 18 TTGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGT 77 Query 172080 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAG 172139 |||||| |||||||| | || || | |||| ||| |||||||||||| | | || Sbjct 78 TTATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAA 137 Query 172140 TTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTC 172192 ||||| |||| | |||| | || ||||| || ||| | ||||||| Sbjct 138 TTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTC 190 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || || || || ||||| ||||| || ||||| ||||| || ||||| || || Sbjct 679 TACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTC 738 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 171439 ||||||||||||| ||||||| ||||||||||| ||||| || ||||| ||| Sbjct 739 CGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565520029135200