Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq343112 104 3e-17 >seq343112 Length=461 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || ||| |||||| | || || |||||||| | | | || | || || || || Sbjct 371 TAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCCGCATAGTAGATATTT 312 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 || || || | ||| || || | || |||||| |||| || |||||||| | | | Sbjct 311 TCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAATGGATATCTCATTAAT 252 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62765 ||||| || || || | |||||| |||||||||||||| || | ||| | | | || || Sbjct 251 ATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGATGACGCATGTTCGAA 192 Query 62766 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 |||| || || || ||||||| ||| || || ||||| || ||||||||| || Sbjct 191 TTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTGTTGAGATTTTTG 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617759762928800