Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37927 107 5e-18 seq30271 102 2e-16 >seq37927 Length=1985 Score = 107 bits (118), Expect = 5e-18 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAA 363665 ||||||||| | ||||| |||||| || ||||| |||| ||| || || | ||| Sbjct 1360 TGCTTTCTTATCTGCATGAAAGACGATAGTATTGAGGGAATCTATGATACTCTCTCTGAA 1419 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 | ||||| || ||| ||| || ||||| ||||| || || |||||||| ||||| Sbjct 1420 T-GTGCTTCCATAAGCAAATCTGCTGGAGGAATCGGTGTCTCAATTCACAATGTCCGTGC 1478 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | |||||||||||| || ||| ||| || ||||| | || |||||||| | Sbjct 1479 TACTGG-CAGTTACATTCGAGGAACAAATGGAACTTCCAATGGAATTGTCCCCATGCTAC 1537 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| || | ||||||| | || || || || |||||||| ||| | ||||| Sbjct 1538 GTGTTTTCAATGATACTGCACGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 1592 >seq30271 Length=2204 Score = 102 bits (112), Expect = 2e-16 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| |||||| ||||||||| |||| ||| || || ||| | |||||| | || | Sbjct 215 ATGAAAGACGATAGCATCGAGGGAATCTATGATACTCTCAAGGAATGTGCTGTCATCAGC 156 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | ||||| ||||||| || | ||||| || Sbjct 155 AAATCTGCTGGAGGAATTGGTGTCTCAGTACACAACATTCGTGCTACTG-GGAGTTATAT 97 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || |||||| | ||||| ||| | ||||| || | | | Sbjct 96 TCGAGGAACTAACGGGACA-TCCAATGGGATTGTTCCTATGTTACGTGTTTTCAATGACA 38 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 |||| | || || || || |||||||| ||| Sbjct 37 CTGCTCGTTATGTAGATCAAGGTGGAGGCAAG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1292228914952760