Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq113513 111 1e-19 seq6868 104 2e-17 seq385372 96.9 3e-15 seq5401 91.5 1e-13 seq138762 87.8 1e-12 seq59492 82.4 6e-11 seq37865 82.4 6e-11 >seq113513 Length=1062 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| ||||||||||| || | ||| || | ||| Sbjct 996 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCC 937 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| | || || ||||| |||||| || | |||||| ||||| Sbjct 936 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCC 877 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||||| | |||| |||| ||||||| Sbjct 876 TGGATCTTAGC--CTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGG 819 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || || ||||| || || || || |||||||| || Sbjct 818 TCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq6868 Length=3892 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||| |||||||| || |||||||||||||| | || | ||||| Sbjct 2897 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCC 2956 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || |||||||| |||||| || | || || ||||| Sbjct 2957 TCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCC 3016 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | ||||||| | |||| |||| |||||||| Sbjct 3017 TGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 3076 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || ||||| || || || || |||||||| || Sbjct 3077 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq385372 Length=416 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || |||||||||||||| || | |||||||||||| Sbjct 209 CCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCG 150 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| | || ||||| || | || |||||||| ||||| || Sbjct 149 AGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 90 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || ||||| ||| || | | | | ||||||| | |||| Sbjct 89 ATGCCCTCCTTATCCTGGATCTTTGC--CTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 32 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGT 16917 |||| |||||||| || || ||||| || Sbjct 31 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq5401 Length=4188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||| ||||| || | ||| | | ||||| | || Sbjct 4135 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGC 4076 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || | || || ||||| |||||| || | |||||| || || ||| | Sbjct 4075 TTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTA 4016 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||||| || |||| |||| ||||||||| || |||||| Sbjct 4015 GCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTC 3956 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 3955 AGGGTCTTCACGAAGATCTGCAT 3933 >seq138762 Length=915 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||||||||||||||||| || | ||||||||| | Sbjct 711 CCCCCACGTAGGCGGAGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAG 652 Query 16769 ATGGTTTTGGCGTCCTCCAATTG-TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | ||||||| | || ||| || || | || || ||||| ||| || || Sbjct 651 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGG 592 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || || || ||| || | | | | ||||||| | |||| Sbjct 591 GATGCCCTGCTTGTCCTGGATCTTAGC--CTTAACGTTGTCAATGGTGTCGCTGCTCTCC 534 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| |||||||| || || ||||| || || || || |||||||| || Sbjct 533 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq59492 Length=1577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||||||||| |||||||| || |||||||||||||| Sbjct 303 CCCGCCGCGGAGGCGGAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 244 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 || || | | ||||||| || || || ||| | || || ||||| |||||| Sbjct 243 CAGCGTCCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCC 189 >seq37865 Length=1986 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||||||| || | |||||||||||| | ||| | ||||||| | || Sbjct 113 TGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 54 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||||| | || |||||||| ||||| || | |||||| ||||| Sbjct 53 TTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401799062678200