Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq469 131 1e-25 seq307656 102 5e-17 seq85039 87.8 1e-12 seq314183 86.0 4e-12 >seq469 Length=7400 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1942 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2001 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2002 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2036 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 3931 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3990 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3991 GCCTGTATTTAGCCTT 4006 >seq307656 Length=504 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || ||||| | | ||| || ||||| || ||| ||||| ||||| || || Sbjct 300 TACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGC 241 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| |||| |||||| || || || || || ||||| || || | | Sbjct 240 TTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTG 181 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||||| ||||||| ||| ||||| | | ||| || | || | Sbjct 180 GTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||| ||||| || || | || || ||||| |||||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq85039 Length=1286 Score = 87.8 bits (96), Expect = 1e-12 Identities = 56/60 (93%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCT-TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||| Sbjct 479 CTCTCTCTGCAAAGTTCTATTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTGTCG 420 >seq314183 Length=495 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | Sbjct 198 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACAGTACTTGTTTGCTATTGGTCGCTC 139 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 138 ACCTATATTTAGCCTTA 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332227740655580