Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq30271 104 3e-17 seq343112 98.7 1e-15 >seq30271 Length=2204 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||||| || | ||| |||| ||| |||| | ||||| |||| ||| || Sbjct 12 TCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATAGGAACAATCCC 71 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| || || || ||| ||||| || ||| | |||||||| || | ||| Sbjct 72 ATTGGATGTCCCGTTAGTTCCTCGAATATAACTCCCAGTAGCACGAATGTTGTGTACTGA 131 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 132 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTGAGAGTATCATAGAT 191 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || ||||| || ||||| | || |||||||| Sbjct 192 TCCCTCGATGCTATCGTCTTTCATGCAGATGAGGAAACAGCT 233 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||| || ||||||||||||||||| | || | |||| | Sbjct 342 GTGCCAGCATTGAAAAGGGTTGGCGAAGCGTGAGTAAACCAGCGCTGGGACATGAGATGG 401 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || ||||| || || | ||| || || ||||| | || | ||||| Sbjct 402 TAGGTTTTGATTGCAGAGTCAATGTCGTCCTTG-TGTATCCCTACGGAAACTCTCATTAG 460 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || |||||||||| ||| | | |||| | ||| || | ||||| Sbjct 461 CATGTGCTGCGGCCTTTCAACGACATTGCCGCCAAGCTTCAGGAGGTAAGACCTCTCCAA 520 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || || || || |||| || ||||||| |||||||| || Sbjct 521 AGTCTTGAAGCCGAAGTAGTCATAATCGAAGTCTCTGTCGTAAATTAT 568 >seq343112 Length=461 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 || ||| |||||| | || || |||||||| | | | || | || || || || Sbjct 371 TAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCCGCATAGTAGATATTT 312 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 || || || | ||| || || | || ||||| |||| || |||||||| | | | Sbjct 311 TCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAATGGATATCTCATTAAT 252 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620 ||||| || || || | |||||| |||||||||||||| || | ||| | | | || || Sbjct 251 ATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGATGACGCATGTTCGAA 192 Query 62621 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 |||| || || || ||||||| ||| || || ||||| || ||||||||| || Sbjct 191 TTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTGTTGAGATTTTTG 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628355587928000